RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 GCC1Q96CN9 775 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 DCTPP1Q9H773 170 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 EFCC1Q9HA90 598 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 PI4KBQ9UBF8 816 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 MYO5AQ9Y4I1 1855 aaKnown RBP20.17■□□□□ 0.82
TRIM54-203ENST00000485306 MLLT1Q03111 559 aaPredicted RBP20.16■□□□□ 0.82
TRIM54-203ENST00000485306 TGFBRAP1Q8WUH2 860 aa20.16■□□□□ 0.82
TRIM54-203ENST00000485306 CCDC136Q96JN2 1154 aa20.16■□□□□ 0.82
TRIM54-203ENST00000485306 BCL11AQ9H165 835 aa20.16■□□□□ 0.82
TRIM54-203ENST00000485306 PDHXO00330 501 aa20.15■□□□□ 0.82
TRIM54-203ENST00000485306 KIF22Q14807 665 aa20.15■□□□□ 0.82
TRIM54-203ENST00000485306 FASTKD5Q7L8L6 764 aaKnown RBP20.15■□□□□ 0.82
TRIM54-203ENST00000485306 ADGRA1Q86SQ6 560 aa20.15■□□□□ 0.82
TRIM54-203ENST00000485306 LRRCC1Q9C099 1032 aa20.15■□□□□ 0.82
TRIM54-203ENST00000485306 HERC5Q9UII4 1024 aaKnown RBP20.15■□□□□ 0.82
TRIM54-203ENST00000485306 MAPKAPK5Q8IW41 473 aa20.14■□□□□ 0.81
TRIM54-203ENST00000485306 MAGEB6Q8N7X4 407 aa20.14■□□□□ 0.81
TRIM54-203ENST00000485306 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.14■□□□□ 0.81
TRIM54-203ENST00000485306 TRIM34Q9BYJ4 488 aa20.14■□□□□ 0.81
TRIM54-203ENST00000485306 AFG3L2Q9Y4W6 797 aa20.14■□□□□ 0.81
TRIM54-203ENST00000485306 NDUFB9Q9Y6M9 179 aa20.14■□□□□ 0.81
TRIM54-203ENST00000485306 FOXP4Q8IVH2 680 aaPredicted RBP20.13■□□□□ 0.81
TRIM54-203ENST00000485306 ANTXR1Q9H6X2 564 aa20.13■□□□□ 0.81
TRIM54-203ENST00000485306 PTPN22Q9Y2R2 807 aa20.13■□□□□ 0.81
TRIM54-203ENST00000485306 GTF3C3Q9Y5Q9 886 aa20.13■□□□□ 0.81
TRIM54-203ENST00000485306 DOCK1Q14185 1865 aa20.13■□□□□ 0.81
TRIM54-203ENST00000485306 FLT1P17948 1338 aa20.12■□□□□ 0.81
TRIM54-203ENST00000485306 A0A0G2JLL6 359 aaPredicted RBP20.12■□□□□ 0.81
TRIM54-203ENST00000485306 SMARCA5O60264 1052 aaPredicted RBP20.12■□□□□ 0.81
TRIM54-203ENST00000485306 SLURP2P0DP57 97 aa20.12■□□□□ 0.81
TRIM54-203ENST00000485306 SOX10P56693 466 aa20.12■□□□□ 0.81
TRIM54-203ENST00000485306 PRRT2Q7Z6L0 340 aaPredicted RBP20.12■□□□□ 0.81
TRIM54-203ENST00000485306 SMC5Q8IY18 1101 aa20.12■□□□□ 0.81
TRIM54-203ENST00000485306 TBC1D2Q9BYX2 928 aa20.12■□□□□ 0.81
TRIM54-203ENST00000485306 FAM196BA6NMK8 535 aa20.11■□□□□ 0.81
TRIM54-203ENST00000485306 IGHDP01880 384 aa20.11■□□□□ 0.81
TRIM54-203ENST00000485306 HLA-DOAP06340 250 aa20.11■□□□□ 0.81
TRIM54-203ENST00000485306 CAP2P40123 477 aa20.11■□□□□ 0.81
TRIM54-203ENST00000485306 USP5P45974 858 aa20.11■□□□□ 0.81
TRIM54-203ENST00000485306 DYNLL1P63167 89 aaKnown RBP20.11■□□□□ 0.81
TRIM54-203ENST00000485306 MOGSQ13724 837 aa20.11■□□□□ 0.81
TRIM54-203ENST00000485306 GADL1Q6ZQY3 521 aa20.11■□□□□ 0.81
TRIM54-203ENST00000485306 CENPQQ7L2Z9 268 aaPredicted RBP20.11■□□□□ 0.81
TRIM54-203ENST00000485306 CRACR2BQ8N4Y2 399 aaPredicted RBP20.11■□□□□ 0.81
TRIM54-203ENST00000485306 PARK7Q99497 189 aaKnown RBP20.11■□□□□ 0.81
TRIM54-203ENST00000485306 CDK5RAP2Q96SN8 1893 aa20.1■□□□□ 0.81
TRIM54-203ENST00000485306 TRIM75PA6NK02 468 aa20.1■□□□□ 0.81
TRIM54-203ENST00000485306 GNRH1P01148 92 aa20.1■□□□□ 0.81
TRIM54-203ENST00000485306 C17orf99Q6UX52 265 aa20.1■□□□□ 0.81
TRIM54-203ENST00000485306 MIGA1Q8NAN2 632 aa20.1■□□□□ 0.81
TRIM54-203ENST00000485306 DNAJC2Q99543 621 aaKnown RBP20.1■□□□□ 0.81
TRIM54-203ENST00000485306 PALD1Q9ULE6 856 aa20.1■□□□□ 0.81
TRIM54-203ENST00000485306 FOCADQ5VW36 1801 aa20.1■□□□□ 0.81
TRIM54-203ENST00000485306 GOLIM4O00461 696 aa20.09■□□□□ 0.81
TRIM54-203ENST00000485306 LACTBP83111 547 aaPredicted RBP20.09■□□□□ 0.81
TRIM54-203ENST00000485306 SLC9C2Q5TAH2 1124 aa20.09■□□□□ 0.81
TRIM54-203ENST00000485306 GPAT2Q6NUI2 795 aa20.09■□□□□ 0.81
TRIM54-203ENST00000485306 AS3MTQ9HBK9 375 aa20.09■□□□□ 0.81
TRIM54-203ENST00000485306 CPA4Q9UI42 421 aa20.09■□□□□ 0.81
TRIM54-203ENST00000485306 SLC45A1Q9Y2W3 748 aa20.09■□□□□ 0.81
TRIM54-203ENST00000485306 USP17L5A8MUK1 530 aa20.08■□□□□ 0.81
TRIM54-203ENST00000485306 ATP5JP18859 108 aa20.08■□□□□ 0.81
TRIM54-203ENST00000485306 B4GALNT3Q6L9W6 998 aa20.08■□□□□ 0.81
TRIM54-203ENST00000485306 METTL16Q86W50 562 aaKnown RBP20.08■□□□□ 0.81
TRIM54-203ENST00000485306 ZNF280CQ8ND82 737 aa20.08■□□□□ 0.81
TRIM54-203ENST00000485306 SAP30BPQ9UHR5 308 aaKnown RBP20.08■□□□□ 0.81
TRIM54-203ENST00000485306 PHIPQ8WWQ0 1821 aa20.07■□□□□ 0.8
TRIM54-203ENST00000485306 MAGEB6P1A0A0J9YX57 407 aa20.07■□□□□ 0.8
TRIM54-203ENST00000485306 ASNSP08243 561 aa20.07■□□□□ 0.8
TRIM54-203ENST00000485306 SPP2Q13103 211 aa20.07■□□□□ 0.8
TRIM54-203ENST00000485306 NBPF11Q86T75 865 aa20.07■□□□□ 0.8
TRIM54-203ENST00000485306 TTC6Q86TZ1 520 aa20.07■□□□□ 0.8
TRIM54-203ENST00000485306 BOLA2Q9H3K6 86 aa20.07■□□□□ 0.8
TRIM54-203ENST00000485306 GINM1Q9NU53 330 aa20.07■□□□□ 0.8
TRIM54-203ENST00000485306 ZBTB47Q9UFB7 747 aaPredicted RBP20.07■□□□□ 0.8
TRIM54-203ENST00000485306 ATAD5Q96QE3 1844 aa20.06■□□□□ 0.8
TRIM54-203ENST00000485306 MYH1P12882 1939 aa20.06■□□□□ 0.8
TRIM54-203ENST00000485306 CYP2C8P10632 490 aa20.06■□□□□ 0.8
TRIM54-203ENST00000485306 PDE6AP16499 860 aa20.06■□□□□ 0.8
TRIM54-203ENST00000485306 HOXD10P28358 340 aa20.06■□□□□ 0.8
TRIM54-203ENST00000485306 PRMT2P55345 433 aa20.06■□□□□ 0.8
TRIM54-203ENST00000485306 PROCA1Q8NCQ7 364 aaPredicted RBP20.06■□□□□ 0.8
TRIM54-203ENST00000485306 PAG1Q9NWQ8 432 aa20.06■□□□□ 0.8
TRIM54-203ENST00000485306 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.06■□□□□ 0.8
TRIM54-203ENST00000485306 PTPRFP10586 1907 aa20.06■□□□□ 0.8
TRIM54-203ENST00000485306 CAP1Q01518 475 aa20.05■□□□□ 0.8
TRIM54-203ENST00000485306 CCDC84Q86UT8 332 aaPredicted RBP20.05■□□□□ 0.8
TRIM54-203ENST00000485306 EDC3Q96F86 508 aaKnown RBP20.05■□□□□ 0.8
TRIM54-203ENST00000485306 HAUS7Q99871 368 aa20.05■□□□□ 0.8
TRIM54-203ENST00000485306 CRNKL1Q9BZJ0 848 aaKnown RBP20.05■□□□□ 0.8
TRIM54-203ENST00000485306 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.05■□□□□ 0.8
TRIM54-203ENST00000485306 PNMA3Q9UL41 463 aa20.05■□□□□ 0.8
TRIM54-203ENST00000485306 AGTPBP1Q9UPW5 1226 aa20.05■□□□□ 0.8
TRIM54-203ENST00000485306 ZNF532Q9HCE3 1301 aa20.04■□□□□ 0.8
TRIM54-203ENST00000485306 FMNL1O95466 1100 aaPredicted RBP20.04■□□□□ 0.8
TRIM54-203ENST00000485306 PSMC4P43686 418 aa20.04■□□□□ 0.8
TRIM54-203ENST00000485306 PABPC4Q13310 644 aaKnown RBP eCLIP20.04■□□□□ 0.8
TRIM54-203ENST00000485306 RRP1BQ14684 758 aaKnown RBP20.04■□□□□ 0.8
TRIM54-203ENST00000485306 SMCR8Q8TEV9 937 aaPredicted RBP20.04■□□□□ 0.8
TRIM54-203ENST00000485306 RIOK1Q9BRS2 568 aaKnown RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms