RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 MAPK8IP1Q9UQF2 711 aa6.39□□□□□ -1.39
VPS50-217ENST00000485140 CYP7A1P22680 504 aa6.38□□□□□ -1.39
VPS50-217ENST00000485140 CLCN7P51798 805 aa6.38□□□□□ -1.39
VPS50-217ENST00000485140 RING1Q06587 406 aa6.38□□□□□ -1.39
VPS50-217ENST00000485140 PLCL1Q15111 1095 aa6.38□□□□□ -1.39
VPS50-217ENST00000485140 ANGEL2Q5VTE6 544 aaKnown RBP6.38□□□□□ -1.39
VPS50-217ENST00000485140 MFSD2AQ8NA29 543 aa6.38□□□□□ -1.39
VPS50-217ENST00000485140 CCDC120Q96HB5 630 aa6.38□□□□□ -1.39
VPS50-217ENST00000485140 ADAMTS4O75173 837 aa6.37□□□□□ -1.39
VPS50-217ENST00000485140 NEFMP07197 916 aa6.37□□□□□ -1.39
VPS50-217ENST00000485140 ITGB5P18084 799 aa6.37□□□□□ -1.39
VPS50-217ENST00000485140 ST13P50502 369 aaKnown RBP6.37□□□□□ -1.39
VPS50-217ENST00000485140 CCDC85BQ15834 202 aaPredicted RBP6.37□□□□□ -1.39
VPS50-217ENST00000485140 C22orf34Q6ZV56 151 aa6.37□□□□□ -1.39
VPS50-217ENST00000485140 TOP6BLQ8N6T0 577 aa6.37□□□□□ -1.39
VPS50-217ENST00000485140 STK35Q8TDR2 534 aa6.37□□□□□ -1.39
VPS50-217ENST00000485140 NOC4LQ9BVI4 516 aaKnown RBP6.37□□□□□ -1.39
VPS50-217ENST00000485140 FOXQ1Q9C009 403 aa6.37□□□□□ -1.39
VPS50-217ENST00000485140 PRDM5Q9NQX1 630 aaPredicted RBP6.37□□□□□ -1.39
VPS50-217ENST00000485140 FUT4P22083 530 aa6.36□□□□□ -1.39
VPS50-217ENST00000485140 PDE4BQ07343 736 aa6.36□□□□□ -1.39
VPS50-217ENST00000485140 TTBK2Q6IQ55 1244 aa6.36□□□□□ -1.39
VPS50-217ENST00000485140 ATG4DQ86TL0 474 aaPredicted RBP6.36□□□□□ -1.39
VPS50-217ENST00000485140 CCDC84Q86UT8 332 aaPredicted RBP6.36□□□□□ -1.39
VPS50-217ENST00000485140 HID1Q8IV36 788 aa6.36□□□□□ -1.39
VPS50-217ENST00000485140 TNKS2Q9H2K2 1166 aa6.36□□□□□ -1.39
VPS50-217ENST00000485140 LGR6Q9HBX8 967 aa6.36□□□□□ -1.39
VPS50-217ENST00000485140 ANKRD33BA6NCL7 494 aa6.35□□□□□ -1.39
VPS50-217ENST00000485140 OXCT1P55809 520 aa6.35□□□□□ -1.39
VPS50-217ENST00000485140 XPCQ01831 940 aaPredicted RBP6.35□□□□□ -1.39
VPS50-217ENST00000485140 PWP1Q13610 501 aa6.35□□□□□ -1.39
VPS50-217ENST00000485140 PPM1JQ5JR12 505 aa6.35□□□□□ -1.39
VPS50-217ENST00000485140 SHISA5Q8N114 240 aa6.35□□□□□ -1.39
VPS50-217ENST00000485140 WNT10AQ9GZT5 417 aa6.35□□□□□ -1.39
VPS50-217ENST00000485140 LMCD1Q9NZU5 365 aa6.35□□□□□ -1.39
VPS50-217ENST00000485140 PAGE1O75459 146 aa6.34□□□□□ -1.39
VPS50-217ENST00000485140 PSMD2Q13200 908 aa6.34□□□□□ -1.39
VPS50-217ENST00000485140 SLC23A3Q6PIS1 610 aa6.34□□□□□ -1.39
VPS50-217ENST00000485140 CYFIP1Q7L576 1253 aa6.34□□□□□ -1.39
VPS50-217ENST00000485140 PLD6Q8N2A8 252 aaKnown RBP6.34□□□□□ -1.39
VPS50-217ENST00000485140 PI4K2BQ8TCG2 481 aa6.34□□□□□ -1.39
VPS50-217ENST00000485140 GRIN3AQ8TCU5 1115 aa6.34□□□□□ -1.39
VPS50-217ENST00000485140 MIR1-1HGQ9H1L0 117 aa6.34□□□□□ -1.39
VPS50-217ENST00000485140 WWC3Q9ULE0 1092 aa6.34□□□□□ -1.39
VPS50-217ENST00000485140 DCDC2CA8MYV0 355 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 FBXO24O75426 580 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 CELA3AP09093 270 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 KIR3DL1P43629 444 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 ETF1P62495 437 aaKnown RBP6.33□□□□□ -1.4
VPS50-217ENST00000485140 AOC3Q16853 763 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 TSNAXIP1Q2TAA8 658 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 ZNF792Q3KQV3 632 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 AGMOQ6ZNB7 445 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 ARMCX6Q7L4S7 300 aa6.33□□□□□ -1.4
VPS50-217ENST00000485140 NTF4P34130 210 aa6.32□□□□□ -1.4
VPS50-217ENST00000485140 DAB2P98082 770 aa6.32□□□□□ -1.4
VPS50-217ENST00000485140 TAF1CQ15572 869 aaPredicted RBP6.32□□□□□ -1.4
VPS50-217ENST00000485140 WIPI1Q5MNZ9 446 aaPredicted RBP6.32□□□□□ -1.4
VPS50-217ENST00000485140 THAP5Q7Z6K1 395 aa6.32□□□□□ -1.4
VPS50-217ENST00000485140 C12orf40Q86WS4 652 aa6.32□□□□□ -1.4
VPS50-217ENST00000485140 AEBP1Q8IUX7 1158 aa6.32□□□□□ -1.4
VPS50-217ENST00000485140 CRELD1Q96HD1 420 aa6.32□□□□□ -1.4
VPS50-217ENST00000485140 DUSP9Q99956 384 aaKnown RBP6.32□□□□□ -1.4
VPS50-217ENST00000485140 FAM53CQ9NYF3 392 aa6.32□□□□□ -1.4
VPS50-217ENST00000485140 ADAM30Q9UKF2 790 aa6.32□□□□□ -1.4
VPS50-217ENST00000485140 PRAMEF27A3QJZ7 478 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 FAM155AB1AL88 458 aaPredicted RBP6.31□□□□□ -1.4
VPS50-217ENST00000485140 LEFTY1O75610 366 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 ETV3P41162 512 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 SFRP5Q5T4F7 317 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 NFXL1Q6ZNB6 911 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 TMC4Q7Z404 712 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 FAM181AQ8N9Y4 354 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 GAL3ST3Q96A11 431 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 PLPPR2Q96GM1 343 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 RC3H2Q9HBD1 1191 aaKnown RBP6.31□□□□□ -1.4
VPS50-217ENST00000485140 MRS2Q9HD23 443 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 CSADQ9Y600 493 aa6.31□□□□□ -1.4
VPS50-217ENST00000485140 CST3P01034 146 aaPredicted RBP6.3□□□□□ -1.4
VPS50-217ENST00000485140 ZNF865P0CJ78 1059 aaPredicted RBP6.3□□□□□ -1.4
VPS50-217ENST00000485140 ITIH2P19823 946 aa6.3□□□□□ -1.4
VPS50-217ENST00000485140 LIG3P49916 1009 aa6.3□□□□□ -1.4
VPS50-217ENST00000485140 SLC6A19Q695T7 634 aa6.3□□□□□ -1.4
VPS50-217ENST00000485140 LRFN4Q6PJG9 635 aa6.3□□□□□ -1.4
VPS50-217ENST00000485140 MFSD4AQ8N468 514 aa6.3□□□□□ -1.4
VPS50-217ENST00000485140 POU5F2Q8N7G0 328 aa6.3□□□□□ -1.4
VPS50-217ENST00000485140 PIWIL2Q8TC59 973 aaKnown RBP6.3□□□□□ -1.4
VPS50-217ENST00000485140 TMEM40Q8WWA1 233 aa6.3□□□□□ -1.4
VPS50-217ENST00000485140 SETDB2Q96T68 719 aa6.3□□□□□ -1.4
VPS50-217ENST00000485140 TPX2Q9ULW0 747 aaKnown RBP6.3□□□□□ -1.4
VPS50-217ENST00000485140 SORBS3O60504 671 aa6.29□□□□□ -1.4
VPS50-217ENST00000485140 BPNT1O95861 308 aa6.29□□□□□ -1.4
VPS50-217ENST00000485140 CD8BP10966 210 aa6.29□□□□□ -1.4
VPS50-217ENST00000485140 RPL6Q02878 288 aaKnown RBP6.29□□□□□ -1.4
VPS50-217ENST00000485140 IKZF1Q13422 519 aa6.29□□□□□ -1.4
VPS50-217ENST00000485140 FAM214BQ7L5A3 538 aa6.29□□□□□ -1.4
VPS50-217ENST00000485140 SPRED2Q7Z698 418 aa6.29□□□□□ -1.4
VPS50-217ENST00000485140 NPAS4Q8IUM7 802 aa6.29□□□□□ -1.4
VPS50-217ENST00000485140 MRPL41Q8IXM3 137 aaKnown RBP6.29□□□□□ -1.4
VPS50-217ENST00000485140 FLAD1Q8NFF5 587 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms