RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 OSBPL3Q9H4L5 887 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 COPRSQ9NQ92 184 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 CHMP3Q9Y3E7 222 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 SLC35F4A4IF30 521 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 SMARCA5O60264 1052 aaPredicted RBP8.2□□□□□ -1.1
USP48-208ENST00000479177 RAB11FIP3O75154 756 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 ANKRD45Q5TZF3 282 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 CC2D2BQ6DHV5 1058 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 PRR5LQ6MZQ0 368 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 TPTE2Q6XPS3 522 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 NLGN1Q8N2Q7 840 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 KLHDC4Q8TBB5 520 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 LRRCC1Q9C099 1032 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 LNPKQ9C0E8 428 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 GREM2Q9H772 168 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 DOLKQ9UPQ8 538 aa8.2□□□□□ -1.1
USP48-208ENST00000479177 COL11A2P13942 1736 aaPredicted RBP8.2□□□□□ -1.1
USP48-208ENST00000479177 A6NJR5 290 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 SPINT1O43278 529 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 CIAO1O76071 339 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 STAU1O95793 577 aaKnown RBP8.19□□□□□ -1.1
USP48-208ENST00000479177 IGHA1P01876 353 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 SERPINB2P05120 415 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 MMP10P09238 476 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 ITGA6P23229 1130 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 SOX11P35716 441 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 CTSOP43234 321 aaPredicted RBP8.19□□□□□ -1.1
USP48-208ENST00000479177 RGS3P49796 1198 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 IFIT5Q13325 482 aaKnown RBP8.19□□□□□ -1.1
USP48-208ENST00000479177 OS9Q13438 667 aaPredicted RBP8.19□□□□□ -1.1
USP48-208ENST00000479177 SF3B3Q15393 1217 aaKnown RBP8.19□□□□□ -1.1
USP48-208ENST00000479177 CCDC57Q2TAC2 916 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 CCDC152Q4G0S7 254 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 OXLD1Q5BKU9 147 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 MSL1Q68DK7 614 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 ERC1Q8IUD2 1116 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 PLPP7Q8NBV4 271 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 RHPN1Q8TCX5 695 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 KIF1BPQ96EK5 621 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 UCN2Q96RP3 112 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 SIL1Q9H173 461 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 SALL3Q9BXA9 1300 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 TAF1P21675 1872 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 ZNF609O15014 1411 aa8.19□□□□□ -1.1
USP48-208ENST00000479177 ARAP2Q8WZ64 1704 aa8.18□□□□□ -1.1
USP48-208ENST00000479177 ANKRD18BA2A2Z9 1011 aa8.18□□□□□ -1.1
USP48-208ENST00000479177 EYA2O00167 538 aa8.18□□□□□ -1.1
USP48-208ENST00000479177 SASH1O94885 1247 aa8.18□□□□□ -1.1
USP48-208ENST00000479177 GTF2E1P29083 439 aaPredicted RBP8.18□□□□□ -1.1
USP48-208ENST00000479177 PTGIRP43119 386 aa8.18□□□□□ -1.1
USP48-208ENST00000479177 ST5P78524 1137 aa8.18□□□□□ -1.1
USP48-208ENST00000479177 G3BP1Q13283 466 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP48-208ENST00000479177 ATG9AQ7Z3C6 839 aa8.18□□□□□ -1.1
USP48-208ENST00000479177 OTUD7AQ8TE49 926 aaPredicted RBP8.18□□□□□ -1.1
USP48-208ENST00000479177 ZNF594Q96JF6 807 aaPredicted RBP8.18□□□□□ -1.1
USP48-208ENST00000479177 PDGFDQ9GZP0 370 aaPredicted RBP8.18□□□□□ -1.1
USP48-208ENST00000479177 CDC14CA4D256 554 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 NPHP1O15259 732 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 TRAK2O60296 914 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 IL15P40933 162 aaPredicted RBP8.17□□□□□ -1.1
USP48-208ENST00000479177 MARSP56192 900 aaKnown RBP8.17□□□□□ -1.1
USP48-208ENST00000479177 CRY2Q49AN0 593 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 LRRC24Q50LG9 513 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 TAF7LQ5H9L4 462 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 LYPD4Q6UWN0 246 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 GLMNQ92990 594 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 PUS3Q9BZE2 481 aaKnown RBP8.17□□□□□ -1.1
USP48-208ENST00000479177 IL1RAPL2Q9NP60 686 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 SEC31BQ9NQW1 1179 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 RAB6BQ9NRW1 208 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.17□□□□□ -1.1
USP48-208ENST00000479177 C10orf71Q711Q0 1435 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 LRRC37AA6NMS7 1700 aa8.17□□□□□ -1.1
USP48-208ENST00000479177 KLRG2A4D1S0 409 aaPredicted RBP8.16□□□□□ -1.1
USP48-208ENST00000479177 SKIP12755 728 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 AOX1Q06278 1338 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 TFCP2Q12800 502 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 FOXD4L5Q5VV16 416 aaPredicted RBP8.16□□□□□ -1.1
USP48-208ENST00000479177 PLEKHM2Q8IWE5 1019 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 DEPDC4Q8N2C3 294 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 NLRP3Q96P20 1036 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 CDC5LQ99459 802 aaKnown RBP8.16□□□□□ -1.1
USP48-208ENST00000479177 ARHGEF10LQ9HCE6 1279 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 POLMQ9NP87 494 aaPredicted RBP8.16□□□□□ -1.1
USP48-208ENST00000479177 KIF13BQ9NQT8 1826 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 PARP3Q9Y6F1 533 aa8.16□□□□□ -1.1
USP48-208ENST00000479177 DLEC1Q9Y238 1755 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 A0A1W2PRU2 124 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 MX1P20591 662 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 IGHMBP2P38935 993 aaKnown RBP8.15□□□□□ -1.1
USP48-208ENST00000479177 TNNI3KQ59H18 835 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 KANK3Q6NY19 840 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 LDHAL6AQ6ZMR3 332 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 TBC1D9Q6ZT07 1266 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 SV2AQ7L0J3 742 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 AACSQ86V21 672 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 C16orf71Q8IYS4 520 aaPredicted RBP8.15□□□□□ -1.1
USP48-208ENST00000479177 CLASRPQ8N2M8 674 aaKnown RBP8.15□□□□□ -1.1
USP48-208ENST00000479177 VGLL2Q8N8G2 317 aa8.15□□□□□ -1.1
USP48-208ENST00000479177 BRIP1Q9BX63 1249 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms