RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 NME1P15531 152 aaKnown RBP7.44□□□□□ -1.22
UPF3B-203ENST00000478840 SQSTM1Q13501 440 aa7.44□□□□□ -1.22
UPF3B-203ENST00000478840 SETDB1Q15047 1291 aa7.44□□□□□ -1.22
UPF3B-203ENST00000478840 ZC3H12AQ5D1E8 599 aaKnown RBP7.44□□□□□ -1.22
UPF3B-203ENST00000478840 RNFT1Q5M7Z0 435 aa7.44□□□□□ -1.22
UPF3B-203ENST00000478840 OVOS1Q6IE37 1185 aa7.44□□□□□ -1.22
UPF3B-203ENST00000478840 ZCRB1Q8TBF4 217 aaKnown RBP7.44□□□□□ -1.22
UPF3B-203ENST00000478840 ATG4CQ96DT6 458 aa7.44□□□□□ -1.22
UPF3B-203ENST00000478840 COL25A1Q9BXS0 654 aaPredicted RBP7.44□□□□□ -1.22
UPF3B-203ENST00000478840 LRRC4BQ9NT99 713 aa7.44□□□□□ -1.22
UPF3B-203ENST00000478840 LOC100289279A0A1B0GTE1 492 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 ESYT3A0FGR9 886 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 M0R082 166 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 DNAJA2O60884 412 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 DDAH1O94760 285 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 ACRP10323 421 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 KRT76Q01546 638 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 MTERF2Q49AM1 385 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 C6orf15Q6UXA7 325 aaPredicted RBP7.43□□□□□ -1.22
UPF3B-203ENST00000478840 C1orf229Q6ZS94 237 aaPredicted RBP7.43□□□□□ -1.22
UPF3B-203ENST00000478840 NLRC3Q7RTR2 1065 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 ZNF417Q8TAU3 575 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 ACDQ96AP0 544 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 ELMO3Q96BJ8 720 aa7.43□□□□□ -1.22
UPF3B-203ENST00000478840 WDR89Q96FK6 387 aaPredicted RBP7.43□□□□□ -1.22
UPF3B-203ENST00000478840 ZNF587Q96SQ5 575 aaPredicted RBP7.43□□□□□ -1.22
UPF3B-203ENST00000478840 PHAXQ9H814 394 aaKnown RBP7.43□□□□□ -1.22
UPF3B-203ENST00000478840 PLCG1P19174 1290 aa7.42□□□□□ -1.22
UPF3B-203ENST00000478840 LORP23490 312 aaPredicted RBP7.42□□□□□ -1.22
UPF3B-203ENST00000478840 INSM1Q01101 510 aaPredicted RBP7.42□□□□□ -1.22
UPF3B-203ENST00000478840 PDE3AQ14432 1141 aa7.42□□□□□ -1.22
UPF3B-203ENST00000478840 NCAPHQ15003 741 aa7.42□□□□□ -1.22
UPF3B-203ENST00000478840 MRM1Q6IN84 353 aaKnown RBP7.42□□□□□ -1.22
UPF3B-203ENST00000478840 UNC5AQ6ZN44 842 aa7.42□□□□□ -1.22
UPF3B-203ENST00000478840 C16orf86Q6ZW13 317 aa7.42□□□□□ -1.22
UPF3B-203ENST00000478840 CHSY3Q70JA7 882 aa7.42□□□□□ -1.22
UPF3B-203ENST00000478840 GALNT11Q8NCW6 608 aa7.42□□□□□ -1.22
UPF3B-203ENST00000478840 SLKQ9H2G2 1235 aaPredicted RBP7.42□□□□□ -1.22
UPF3B-203ENST00000478840 ZMYM5Q9UJ78 669 aa7.42□□□□□ -1.22
UPF3B-203ENST00000478840 B2RBV5 119 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 DNAJC6O75061 913 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 LIG1P18858 919 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 CCNFP41002 786 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 ERVK-24P63145 666 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 COL9A3Q14050 684 aaPredicted RBP7.41□□□□□ -1.22
UPF3B-203ENST00000478840 LONRF2Q1L5Z9 754 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 C8orf86Q6ZUL3 223 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 SYNPOQ8N3V7 929 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 EDARADDQ8WWZ3 215 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 SLC9A7Q96T83 725 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 WDR18Q9BV38 432 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 CARD10Q9BWT7 1032 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 WNT10AQ9GZT5 417 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 EPN3Q9H201 632 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 SPC25Q9HBM1 224 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 IFT57Q9NWB7 429 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 LEMD3Q9Y2U8 911 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 NOP58Q9Y2X3 529 aaKnown RBP7.41□□□□□ -1.22
UPF3B-203ENST00000478840 LTBP3Q9NS15 1303 aa7.41□□□□□ -1.22
UPF3B-203ENST00000478840 DIAPH1O60610 1272 aaKnown RBP7.4□□□□□ -1.22
UPF3B-203ENST00000478840 ADAM11O75078 769 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 AOC2O75106 756 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 SLFN14P0C7P3 912 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 NID1P14543 1247 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 IBSPP21815 317 aaPredicted RBP7.4□□□□□ -1.22
UPF3B-203ENST00000478840 IGBP1P78318 339 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 ZYXQ15942 572 aaKnown RBP7.4□□□□□ -1.22
UPF3B-203ENST00000478840 SPATC1Q76KD6 591 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 EEPD1Q7L9B9 569 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 DTWD1Q8N5C7 304 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 DCAF11Q8TEB1 546 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 BTBD6Q96KE9 485 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 FEZ1Q99689 392 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 KDM2BQ8NHM5 1336 aa7.4□□□□□ -1.22
UPF3B-203ENST00000478840 hCG_2014768A0A024R1R8 64 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 DCDC2CA8MYV0 355 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 FANCGO15287 622 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 OIP5O43482 229 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 DLGAP3O95886 979 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 PGRP06401 933 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 GRK4P32298 578 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 VHLLQ6RSH7 139 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 FILIP1Q7Z7B0 1213 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 C12orf40Q86WS4 652 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 MCATQ8IVS2 390 aaKnown RBP7.39□□□□□ -1.23
UPF3B-203ENST00000478840 SLFN12Q8IYM2 578 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 GALNT6Q8NCL4 622 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 ACSF2Q96CM8 615 aaPredicted RBP7.39□□□□□ -1.23
UPF3B-203ENST00000478840 USP26Q9BXU7 913 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 HIF3AQ9Y2N7 669 aa7.39□□□□□ -1.23
UPF3B-203ENST00000478840 PPP1R12AO14974 1030 aaPredicted RBP7.38□□□□□ -1.23
UPF3B-203ENST00000478840 ADAMTS2O95450 1211 aa7.38□□□□□ -1.23
UPF3B-203ENST00000478840 CD68P34810 354 aaPredicted RBP7.38□□□□□ -1.23
UPF3B-203ENST00000478840 GYS2P54840 703 aa7.38□□□□□ -1.23
UPF3B-203ENST00000478840 NLRP12P59046 1061 aa7.38□□□□□ -1.23
UPF3B-203ENST00000478840 SSRP1Q08945 709 aaKnown RBP7.38□□□□□ -1.23
UPF3B-203ENST00000478840 FOXD4L6Q3SYB3 417 aaPredicted RBP7.38□□□□□ -1.23
UPF3B-203ENST00000478840 TAF7LQ5H9L4 462 aa7.38□□□□□ -1.23
UPF3B-203ENST00000478840 ZC3H12BQ5HYM0 836 aaKnown RBP7.38□□□□□ -1.23
UPF3B-203ENST00000478840 FOXD4L3Q6VB84 417 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms