RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	C11orf49	Q9H6J7	331 aa		9.31	□□□□□ -0.92
HDAC9-223	ENST00000476135	LAMA2	P24043	3122 aa	Known RBP	9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135		F8W031	263 aa	Predicted RBP	9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	KLRK1	P26718	216 aa		9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	TNNI2	P48788	182 aa		9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	RBM5	P52756	815 aa	Known RBP eCLIP	9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	PPAT	Q06203	517 aa		9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	CNGB1	Q14028	1251 aa	Predicted RBP	9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	PLEKHF1	Q96S99	279 aa		9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	ANKRD2	Q9GZV1	360 aa		9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	HYPK	Q9NX55	129 aa		9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	DBF4	Q9UBU7	674 aa	Predicted RBP	9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135		V9GY48	417 aa	Predicted RBP	9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	MYH3	P11055	1940 aa		9.3	□□□□□ -0.92
HDAC9-223	ENST00000476135	GFRA3	O60609	400 aa		9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	CTSW	P56202	376 aa		9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	MDM2	Q00987	491 aa	Predicted RBP	9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	LAPTM4A	Q15012	233 aa		9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	MYLIP	Q8WY64	445 aa		9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	WRNIP1	Q96S55	665 aa		9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	PARK7	Q99497	189 aa	Known RBP	9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	TMEM39B	Q9GZU3	492 aa		9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	TDRD3	Q9H7E2	651 aa	Known RBP	9.29	□□□□□ -0.92
HDAC9-223	ENST00000476135	TCP10L2	B9ZVM9	353 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	IL1R1	P14778	569 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	FOSL2	P15408	326 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	GGCX	P38435	758 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	MOGS	Q13724	837 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	HIC1	Q14526	733 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	HDGFL1	Q5TGJ6	251 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	C15orf52	Q6ZUT6	534 aa	Known RBP	9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	RIC3	Q7Z5B4	369 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	TTLL11	Q8NHH1	800 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	ZKSCAN4	Q969J2	545 aa	Predicted RBP	9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	HOOK2	Q96ED9	719 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	CWC25	Q9NXE8	425 aa	Predicted RBP	9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	SERPINA10	Q9UK55	444 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	OGDHL	Q9ULD0	1010 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	KCNH4	Q9UQ05	1017 aa		9.28	□□□□□ -0.92
HDAC9-223	ENST00000476135	TNPO2	O14787	897 aa	Known RBP	9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	ACTN4	O43707	911 aa	Known RBP	9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	OAT	P04181	439 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	CFH	P08603	1231 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	HOXB7	P09629	217 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	PPP2R1A	P30153	589 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	IGHMBP2	P38935	993 aa	Known RBP	9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	KCNJ4	P48050	445 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	KMT5B	Q4FZB7	885 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	ERICH6	Q7L0X2	663 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	JARID2	Q92833	1246 aa	Predicted RBP	9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	MYD88	Q99836	296 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	GREM2	Q9H772	168 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	HMX1	Q9NP08	348 aa	Predicted RBP	9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	PFAS	O15067	1338 aa		9.27	□□□□□ -0.93
HDAC9-223	ENST00000476135	DOCK3	Q8IZD9	2030 aa		9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	KRT24	Q2M2I5	525 aa		9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	DCAF15	Q66K64	600 aa		9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	SMYD5	Q6GMV2	418 aa		9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	GPAT2	Q6NUI2	795 aa		9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	ZNF804A	Q7Z570	1209 aa		9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	DZIP1L	Q8IYY4	767 aa	Known RBP	9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	COA7	Q96BR5	231 aa		9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	LBHD1	Q9BQE6	289 aa	Predicted RBP	9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	TMUB1	Q9BVT8	246 aa		9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	PNN	Q9H307	717 aa	Known RBP	9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	TTYH1	Q9H313	450 aa	Predicted RBP	9.26	□□□□□ -0.93
HDAC9-223	ENST00000476135	LCE2B	O14633	110 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	TLL1	O43897	1013 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	HMGCR	P04035	888 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	CYP2C8	P10632	490 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	COL6A1	P12109	1028 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	FECH	P22830	423 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	SMAD3	P84022	425 aa	Known RBP	9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	METTL3	Q86U44	580 aa	Known RBP	9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	ATXN2L	Q8WWM7	1075 aa	Known RBP	9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	SNX27	Q96L92	541 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	C1QTNF1	Q9BXJ1	281 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	ZNF341	Q9BYN7	854 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	TTF2	Q9UNY4	1162 aa	Known RBP	9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	MAPK8IP3	Q9UPT6	1336 aa		9.25	□□□□□ -0.93
HDAC9-223	ENST00000476135	CHL1	O00533	1208 aa		9.24	□□□□□ -0.93
HDAC9-223	ENST00000476135	CXCL11	O14625	94 aa		9.24	□□□□□ -0.93
HDAC9-223	ENST00000476135	GPR37	O15354	613 aa		9.24	□□□□□ -0.93
HDAC9-223	ENST00000476135	CHRND	Q07001	517 aa		9.24	□□□□□ -0.93
HDAC9-223	ENST00000476135	LRRC26	Q2I0M4	334 aa		9.24	□□□□□ -0.93
HDAC9-223	ENST00000476135	FAM83A	Q86UY5	434 aa		9.24	□□□□□ -0.93
HDAC9-223	ENST00000476135	MPHOSPH8	Q99549	860 aa		9.24	□□□□□ -0.93
HDAC9-223	ENST00000476135	SLC45A1	Q9Y2W3	748 aa		9.24	□□□□□ -0.93
HDAC9-223	ENST00000476135	NCOR1	O75376	2440 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	RNF223	E7ERA6	249 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	INPP5B	P32019	993 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	CRK	P46108	304 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	RIPK4	P57078	832 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	LMOD3	Q0VAK6	560 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	FKBP1C	Q5VVH2	108 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	FASTKD5	Q7L8L6	764 aa	Known RBP	9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	USP38	Q8NB14	1042 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	ADAMTS19	Q8TE59	1207 aa		9.23	□□□□□ -0.93
HDAC9-223	ENST00000476135	METTL22	Q9BUU2	404 aa	Predicted RBP	9.23	□□□□□ -0.93

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