RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 UBAC1Q9BSL1 405 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 CLSTN2Q9H4D0 955 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 CD209Q9NNX6 404 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 RBM28Q9NW13 759 aaKnown RBP8.86□□□□□ -0.99
COL6A3-208ENST00000468792 TFCP2L1Q9NZI6 479 aa8.86□□□□□ -0.99
COL6A3-208ENST00000468792 NAP1L2Q9ULW6 460 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-208ENST00000468792 IQSEC3Q9UPP2 1182 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-208ENST00000468792 DDAH1O94760 285 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 DEXIO95424 95 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 CCDC192P0DO97 292 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 NPR1P16066 1061 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 PLCG2P16885 1265 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 PRDX5P30044 214 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 ALDH1B1P30837 517 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 DYNLL1P63167 89 aaKnown RBP8.85□□□□□ -0.99
COL6A3-208ENST00000468792 GPSM2P81274 684 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 PDE4BQ07343 736 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 SSRP1Q08945 709 aaKnown RBP8.85□□□□□ -0.99
COL6A3-208ENST00000468792 MAP3K11Q16584 847 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 RTN1Q16799 776 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 MYSM1Q5VVJ2 828 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 FAM173BQ6P4H8 233 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 DZIP1Q86YF9 867 aaKnown RBP8.85□□□□□ -0.99
COL6A3-208ENST00000468792 TRIM22Q8IYM9 498 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 ZNF654Q8IZM8 581 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 CRACR2BQ8N4Y2 399 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-208ENST00000468792 FANCBQ8NB91 859 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 LINC00301Q8NCQ3 95 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 NKX2-3Q8TAU0 364 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 SDR42E1Q8WUS8 393 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 USP28Q96RU2 1077 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 ZSCAN10Q96SZ4 725 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-208ENST00000468792 ALG1Q9BT22 464 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 RNF26Q9BY78 433 aaPredicted RBP8.85□□□□□ -0.99
COL6A3-208ENST00000468792 NUP62CLQ9H1M0 184 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.85□□□□□ -0.99
COL6A3-208ENST00000468792 TCP11L1Q9NUJ3 509 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 TFIP11Q9UBB9 837 aaKnown RBP8.85□□□□□ -0.99
COL6A3-208ENST00000468792 TAOK2Q9UL54 1235 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 ATP6V0A2Q9Y487 856 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 DLEC1Q9Y238 1755 aa8.85□□□□□ -0.99
COL6A3-208ENST00000468792 GPR75-ASB3A0A0A6YYF3 556 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 FAM237AA0A1B0GTK4 181 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 MINDY4BA8MYZ0 360 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 USP17L12C9JPN9 530 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 USP17L21D6R901 530 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 PPP6R2O75170 966 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 LIG1P18858 919 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 PDE6BP35913 854 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 TROAPQ12815 778 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 TRIM29Q14134 588 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 C12orf60Q5U649 245 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 KRT40Q6A162 431 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 NBPF11Q86T75 865 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 MICU3Q86XE3 530 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 DGKHQ86XP1 1220 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 ELOA2Q8IYF1 753 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-208ENST00000468792 ENAHQ8N8S7 591 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-208ENST00000468792 ENGASEQ8NFI3 743 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 TBC1D16Q8TBP0 767 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 COA1Q9GZY4 146 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 FOXP1Q9H334 677 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-208ENST00000468792 ZNF287Q9HBT7 754 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 SENP2Q9HC62 589 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 DACT1Q9NYF0 836 aa8.84□□□□□ -0.99
COL6A3-208ENST00000468792 LAMB1P07942 1786 aa8.84□□□□□ -1
COL6A3-208ENST00000468792 MROH7-TTC4A0A0A0MT08 1334 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 GAKO14976 1311 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 TNKSO95271 1327 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 PRPF3O43395 683 aaKnown RBP8.83□□□□□ -1
COL6A3-208ENST00000468792 RANBP6O60518 1105 aaKnown RBP8.83□□□□□ -1
COL6A3-208ENST00000468792 UFL1O94874 794 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 SRGNP10124 158 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 CMA1P23946 247 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 FAM160A1Q05DH4 1040 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 FUT2Q10981 343 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 CHAF1AQ13111 956 aaPredicted RBP8.83□□□□□ -1
COL6A3-208ENST00000468792 SNW1Q13573 536 aaKnown RBP8.83□□□□□ -1
COL6A3-208ENST00000468792 SLC39A14Q15043 492 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 ANO1Q5XXA6 986 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 CATIPQ7Z7H3 387 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 AMOTL1Q8IY63 956 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 CCDC24Q8N4L8 307 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 JMYQ8N9B5 988 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 TRIM44Q96DX7 344 aaPredicted RBP8.83□□□□□ -1
COL6A3-208ENST00000468792 NOL10Q9BSC4 688 aaKnown RBP8.83□□□□□ -1
COL6A3-208ENST00000468792 MRIQ9BWK5 157 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 TNMDQ9H2S6 317 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 INCENPQ9NQS7 918 aa8.83□□□□□ -1
COL6A3-208ENST00000468792 AATFQ9NY61 560 aaKnown RBP eCLIP8.83□□□□□ -1
COL6A3-208ENST00000468792 PPEF1O14829 653 aaPredicted RBP8.82□□□□□ -1
COL6A3-208ENST00000468792 SPTLC2O15270 562 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 DTNBO60941 627 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 NR1I2O75469 434 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 MMP1P03956 469 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 XBP1P17861 261 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 RXRBP28702 533 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 FKBP1AP62942 108 aaKnown RBP8.82□□□□□ -1
COL6A3-208ENST00000468792 SAFBQ15424 915 aaKnown RBP eCLIP8.82□□□□□ -1
COL6A3-208ENST00000468792 ZNF827Q17R98 1081 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms