RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 KCNG4Q8TDN1 519 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 UBAC1Q9BSL1 405 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 CCDC196A0A1B0GTZ2 297 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 C6orf229H3BNL8 230 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 MYO1BO43795 1136 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 INTS5Q6P9B9 1019 aaKnown RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 SAMD1Q6SPF0 538 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 CCDC129Q6ZRS4 1044 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 DZIP1Q86YF9 867 aaKnown RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 TMTC2Q8N394 836 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 BRF1Q92994 677 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 RBM17Q96I25 401 aaKnown RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 ZFP91Q96JP5 570 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF512BQ96KM6 892 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 LLPHQ9BRT6 129 aaKnown RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 TMEM63CQ9P1W3 806 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 ADAMTS7Q9UKP4 1686 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 SEMA3EO15041 775 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 GPAA1O43292 621 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CYP7A1P22680 504 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 HSPA1LP34931 641 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF804AQ7Z570 1209 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 AOPEPQ8N6M6 819 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 MRPS27Q92552 414 aaKnown RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CCDC114Q96M63 670 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF287Q9HBT7 754 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 RIPOR2Q9Y4F9 1068 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 KCPQ6ZWJ8 1503 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 KCNQ2O43526 872 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CD2BP2O95400 341 aaKnown RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 ADORA1P30542 326 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 KIF5BP33176 963 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 IFFO1Q0D2I5 559 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 MFSD6Q6ZSS7 791 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 TAX1BP1Q86VP1 789 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 MAGEB6Q8N7X4 407 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CLNS1AP54105 237 aaKnown RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 DNM1Q05193 864 aaKnown RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CHRNDQ07001 517 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 SEPT7Q16181 437 aaKnown RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 NAA16Q6N069 864 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 TMED8Q6PL24 325 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CEP57Q86XR8 500 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 EFCAB13Q8IY85 973 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 RASEFQ8IZ41 740 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CNNM3Q8NE01 707 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 C8orf76Q96K31 380 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CLSTN2Q9H4D0 955 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF609O15014 1411 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 XIRP1Q702N8 1843 aaKnown RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 BRD1O95696 1058 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 BAG3O95817 575 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 HSPD1P10809 573 aaKnown RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CDC25BP30305 580 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 SPAG1Q07617 926 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 ITPK1Q13572 414 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 TSGA10IPQ3SY00 556 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 SLC27A3Q5K4L6 730 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 FKBP15Q5T1M5 1219 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 ZSCAN29Q8IWY8 852 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 NUP88Q99567 741 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 CRNKL1Q9BZJ0 848 aaKnown RBP7.01□□□□□ -1.29
VPS13D-202ENST00000460333 NDUFB9Q9Y6M9 179 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 LAMB4A4D0S4 1761 aa7.01□□□□□ -1.29
VPS13D-202ENST00000460333 MAGEB6P1A0A0J9YX57 407 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 CCDC172P0C7W6 258 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 IBSPP21815 317 aaPredicted RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 HIBADHP31937 336 aaKnown RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 NAA25Q14CX7 972 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 TERF2Q15554 542 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 CERS3Q8IU89 383 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 ALDH8A1Q9H2A2 487 aaPredicted RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 BSDC1Q9NW68 430 aaPredicted RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 TFIP11Q9UBB9 837 aaKnown RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 SLC4A4Q9Y6R1 1079 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 EFCAB8A8MWE9 144 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 HAND2P61296 217 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 ERFEQ4G0M1 354 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 LRP6O75581 1613 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 GOLGA8BA8MQT2 603 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 PRC1O43663 620 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 SLFNL1Q499Z3 407 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF589Q86UQ0 364 aaPredicted RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 NECAB1Q8N987 351 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 LARP6Q9BRS8 491 aaKnown RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF532Q9HCE3 1301 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 MAATS1Q7Z4T9 603 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 IQCA1Q86XH1 822 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 TMEM87BQ96K49 555 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 STMN4Q9H169 189 aaPredicted RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 RRP15Q9Y3B9 282 aaKnown RBP7□□□□□ -1.29
VPS13D-202ENST00000460333 SLC12A7Q9Y666 1083 aa7□□□□□ -1.29
VPS13D-202ENST00000460333 SIPA1L3O60292 1781 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 MAST3O60307 1309 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 IFIT3O14879 490 aaKnown RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 KIF1CO43896 1103 aaKnown RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 FGFR1OPO95684 399 aaKnown RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 PDE6AP16499 860 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 ADD2P35612 726 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 CYLC1P35663 651 aaPredicted RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms