RNA–Protein interactions for RNA: ENST00000443727.1

LRCH3-208, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-208ENST00000443727 MLLT1Q03111 559 aaPredicted RBP24.41■■□□□ 1.5
LRCH3-208ENST00000443727 KIF22Q14807 665 aa24.41■■□□□ 1.5
LRCH3-208ENST00000443727 TMED8Q6PL24 325 aaPredicted RBP24.41■■□□□ 1.5
LRCH3-208ENST00000443727 FASTKD5Q7L8L6 764 aaKnown RBP24.41■■□□□ 1.5
LRCH3-208ENST00000443727 TRIM75PA6NK02 468 aa24.4■■□□□ 1.5
LRCH3-208ENST00000443727 USP5P45974 858 aa24.4■■□□□ 1.5
LRCH3-208ENST00000443727 GADL1Q6ZQY3 521 aa24.4■■□□□ 1.5
LRCH3-208ENST00000443727 CRACR2BQ8N4Y2 399 aaPredicted RBP24.4■■□□□ 1.5
LRCH3-208ENST00000443727 LRRCC1Q9C099 1032 aa24.4■■□□□ 1.5
LRCH3-208ENST00000443727 SAP30BPQ9UHR5 308 aaKnown RBP24.4■■□□□ 1.5
LRCH3-208ENST00000443727 AFG3L2Q9Y4W6 797 aa24.4■■□□□ 1.5
LRCH3-208ENST00000443727 GOLIM4O00461 696 aa24.39■■□□□ 1.49
LRCH3-208ENST00000443727 RGS19P49795 217 aa24.39■■□□□ 1.49
LRCH3-208ENST00000443727 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.39■■□□□ 1.49
LRCH3-208ENST00000443727 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.39■■□□□ 1.49
LRCH3-208ENST00000443727 PALD1Q9ULE6 856 aa24.39■■□□□ 1.49
LRCH3-208ENST00000443727 PTPN22Q9Y2R2 807 aa24.39■■□□□ 1.49
LRCH3-208ENST00000443727 A0A0G2JLL6 359 aaPredicted RBP24.38■■□□□ 1.49
LRCH3-208ENST00000443727 HLA-DOAP06340 250 aa24.38■■□□□ 1.49
LRCH3-208ENST00000443727 MOGSQ13724 837 aa24.38■■□□□ 1.49
LRCH3-208ENST00000443727 SLC9C2Q5TAH2 1124 aa24.38■■□□□ 1.49
LRCH3-208ENST00000443727 PRRT2Q7Z6L0 340 aaPredicted RBP24.38■■□□□ 1.49
LRCH3-208ENST00000443727 CCDC84Q86UT8 332 aaPredicted RBP24.38■■□□□ 1.49
LRCH3-208ENST00000443727 FOXP4Q8IVH2 680 aaPredicted RBP24.38■■□□□ 1.49
LRCH3-208ENST00000443727 PARK7Q99497 189 aaKnown RBP24.38■■□□□ 1.49
LRCH3-208ENST00000443727 CPA4Q9UI42 421 aa24.38■■□□□ 1.49
LRCH3-208ENST00000443727 MYO5AQ9Y4I1 1855 aaKnown RBP24.38■■□□□ 1.49
LRCH3-208ENST00000443727 CAP2P40123 477 aa24.37■■□□□ 1.49
LRCH3-208ENST00000443727 SLC4A8Q2Y0W8 1093 aa24.36■■□□□ 1.49
LRCH3-208ENST00000443727 GPAT2Q6NUI2 795 aa24.36■■□□□ 1.49
LRCH3-208ENST00000443727 BOLA2Q9H3K6 86 aa24.36■■□□□ 1.49
LRCH3-208ENST00000443727 DOCK1Q14185 1865 aa24.36■■□□□ 1.49
LRCH3-208ENST00000443727 MAGEB6P1A0A0J9YX57 407 aa24.35■■□□□ 1.49
LRCH3-208ENST00000443727 PDE6AP16499 860 aa24.35■■□□□ 1.49
LRCH3-208ENST00000443727 LACTBP83111 547 aaPredicted RBP24.35■■□□□ 1.49
LRCH3-208ENST00000443727 USP17L5A8MUK1 530 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 SMARCA5O60264 1052 aaPredicted RBP24.34■■□□□ 1.49
LRCH3-208ENST00000443727 ECM2O94769 699 aaPredicted RBP24.34■■□□□ 1.49
LRCH3-208ENST00000443727 CYP2C8P10632 490 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 ATP5JP18859 108 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 CAP1Q01518 475 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 SPP2Q13103 211 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 C17orf99Q6UX52 265 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 ZNF280CQ8ND82 737 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 TBC1D2Q9BYX2 928 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 AS3MTQ9HBK9 375 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 PAG1Q9NWQ8 432 aa24.34■■□□□ 1.49
LRCH3-208ENST00000443727 RRP1P56182 461 aaKnown RBP24.33■■□□□ 1.49
LRCH3-208ENST00000443727 RRP1BQ14684 758 aaKnown RBP24.33■■□□□ 1.49
LRCH3-208ENST00000443727 EDC3Q96F86 508 aaKnown RBP24.33■■□□□ 1.49
LRCH3-208ENST00000443727 ZNF532Q9HCE3 1301 aa24.33■■□□□ 1.48
LRCH3-208ENST00000443727 ASNSP08243 561 aa24.32■■□□□ 1.48
LRCH3-208ENST00000443727 SMCR8Q8TEV9 937 aaPredicted RBP24.32■■□□□ 1.48
LRCH3-208ENST00000443727 CRNKL1Q9BZJ0 848 aaKnown RBP24.32■■□□□ 1.48
LRCH3-208ENST00000443727 ARHGAP39Q9C0H5 1083 aa24.32■■□□□ 1.48
LRCH3-208ENST00000443727 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.32■■□□□ 1.48
LRCH3-208ENST00000443727 SLC45A1Q9Y2W3 748 aa24.32■■□□□ 1.48
LRCH3-208ENST00000443727 TTC6Q86TZ1 520 aa24.31■■□□□ 1.48
LRCH3-208ENST00000443727 HAUS7Q99871 368 aa24.31■■□□□ 1.48
LRCH3-208ENST00000443727 RIOK1Q9BRS2 568 aaKnown RBP24.31■■□□□ 1.48
LRCH3-208ENST00000443727 DCTPP1Q9H773 170 aa24.31■■□□□ 1.48
LRCH3-208ENST00000443727 AGTPBP1Q9UPW5 1226 aa24.31■■□□□ 1.48
LRCH3-208ENST00000443727 GDF11O95390 407 aa24.3■■□□□ 1.48
LRCH3-208ENST00000443727 FMNL1O95466 1100 aaPredicted RBP24.3■■□□□ 1.48
LRCH3-208ENST00000443727 GNRH1P01148 92 aa24.3■■□□□ 1.48
LRCH3-208ENST00000443727 METTL16Q86W50 562 aaKnown RBP24.3■■□□□ 1.48
LRCH3-208ENST00000443727 GPATCH3Q96I76 525 aa24.3■■□□□ 1.48
LRCH3-208ENST00000443727 DNAJC18Q9H819 358 aa24.3■■□□□ 1.48
LRCH3-208ENST00000443727 ADGRA2Q96PE1 1338 aa24.3■■□□□ 1.48
LRCH3-208ENST00000443727 PSMC4P43686 418 aa24.29■■□□□ 1.48
LRCH3-208ENST00000443727 HMGCS2P54868 508 aa24.29■■□□□ 1.48
LRCH3-208ENST00000443727 PROCA1Q8NCQ7 364 aaPredicted RBP24.29■■□□□ 1.48
LRCH3-208ENST00000443727 SERPINB13Q9UIV8 391 aa24.29■■□□□ 1.48
LRCH3-208ENST00000443727 PNMA3Q9UL41 463 aa24.29■■□□□ 1.48
LRCH3-208ENST00000443727 PTCH2Q9Y6C5 1203 aa24.29■■□□□ 1.48
LRCH3-208ENST00000443727 FOCADQ5VW36 1801 aa24.28■■□□□ 1.48
LRCH3-208ENST00000443727 CDK5RAP2Q96SN8 1893 aa24.28■■□□□ 1.48
LRCH3-208ENST00000443727 POLR3DP05423 398 aaPredicted RBP24.28■■□□□ 1.48
LRCH3-208ENST00000443727 PABPC4Q13310 644 aaKnown RBP eCLIP24.28■■□□□ 1.48
LRCH3-208ENST00000443727 SLC9C1Q4G0N8 1177 aa24.28■■□□□ 1.48
LRCH3-208ENST00000443727 TREML2Q5T2D2 321 aa24.28■■□□□ 1.48
LRCH3-208ENST00000443727 NBPF11Q86T75 865 aa24.28■■□□□ 1.48
LRCH3-208ENST00000443727 ECHDC1Q9NTX5 307 aa24.28■■□□□ 1.48
LRCH3-208ENST00000443727 GINM1Q9NU53 330 aa24.28■■□□□ 1.48
LRCH3-208ENST00000443727 TCRBV5S4A2TA0A5A2 114 aa24.27■■□□□ 1.48
LRCH3-208ENST00000443727 HOXD10P28358 340 aa24.27■■□□□ 1.48
LRCH3-208ENST00000443727 WDR18Q9BV38 432 aa24.27■■□□□ 1.48
LRCH3-208ENST00000443727 EHD4Q9H223 541 aa24.27■■□□□ 1.48
LRCH3-208ENST00000443727 MCM9Q9NXL9 1143 aa24.27■■□□□ 1.48
LRCH3-208ENST00000443727 ZBTB21Q9ULJ3 1066 aa24.27■■□□□ 1.48
LRCH3-208ENST00000443727 PHIPQ8WWQ0 1821 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 BCRP11274 1271 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 PRMT2P55345 433 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 FCGRTP55899 365 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 MTMR2Q13614 643 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 ZSCAN25Q6NSZ9 544 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 ARMC5Q96C12 935 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 TRIM47Q96LD4 638 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 TMOD4Q9NZQ9 345 aa24.26■■□□□ 1.47
LRCH3-208ENST00000443727 PCDHB15Q9Y5E8 787 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms