RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ZNF397Q8NF99 534 aaPredicted RBP18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 IGDCC4Q8TDY8 1250 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 LY9Q9HBG7 655 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 RGL2O15211 777 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 ZBTB43O43298 467 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 RANBP6O60518 1105 aaKnown RBP18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 IDH1O75874 414 aaKnown RBP18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 SLU7O95391 586 aaKnown RBP18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 MICU3Q86XE3 530 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 PHKBQ93100 1093 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 L2HGDHQ9H9P8 463 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 FAM217BQ9NTX9 383 aaPredicted RBP18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 WWC3Q9ULE0 1092 aa18.9■□□□□ 0.62
CLCNKA-203ENST00000439316 UBR3Q6ZT12 1888 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 PDE8BO95263 885 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 APPP05067 770 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 UQCRFS1P1P0C7P4 283 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 LMOD1P29536 600 aaPredicted RBP18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 RFC4P35249 363 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 PHKA1P46020 1223 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 CCDC102BQ68D86 513 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 PROM2Q8N271 834 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 STRBPQ96SI9 672 aaKnown RBP18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 DOCK2Q92608 1830 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 NID2Q14112 1375 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 CHD4Q14839 1912 aa18.89■□□□□ 0.61
CLCNKA-203ENST00000439316 GOLGA8AA7E2F4 631 aa18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 NRDCO43847 1150 aa18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 CUTAO60888 179 aa18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 IARSP41252 1262 aaKnown RBP18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 MYL5Q02045 173 aa18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 TXNRD1Q16881 649 aa18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 MYO1BO43795 1136 aa18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 TUBB4AP04350 444 aa18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 ATP1A3P13637 1013 aa18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 GNL2Q13823 731 aaKnown RBP18.88■□□□□ 0.61
CLCNKA-203ENST00000439316 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 CBFA2T2O43439 604 aa18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 LIFRP42702 1097 aa18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 PNOCQ13519 176 aa18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 TRIM29Q14134 588 aa18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 TMEM67Q5HYA8 995 aa18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 METTL16Q86W50 562 aaKnown RBP18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 MORC2Q9Y6X9 1032 aaPredicted RBP18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 LAMB2P55268 1798 aa18.87■□□□□ 0.61
CLCNKA-203ENST00000439316 APBA3O96018 575 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 KMT5BQ4FZB7 885 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 ERFEQ4G0M1 354 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 ISM2Q6H9L7 571 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 NFXL1Q6ZNB6 911 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 AIDAQ96BJ3 306 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 SETDB2Q96T68 719 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 EPB41L4AQ9HCS5 686 aaPredicted RBP18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 FGFR2P21802 821 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 ELF2Q15723 593 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 KRBA2Q6ZNG9 492 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 ELOA2Q8IYF1 753 aaPredicted RBP18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 CLIC6Q96NY7 704 aa18.86■□□□□ 0.61
CLCNKA-203ENST00000439316 FMNL1O95466 1100 aaPredicted RBP18.85■□□□□ 0.61
CLCNKA-203ENST00000439316 PUM3Q15397 648 aaKnown RBP18.85■□□□□ 0.61
CLCNKA-203ENST00000439316 CCDC93Q567U6 631 aa18.85■□□□□ 0.61
CLCNKA-203ENST00000439316 LPIN2Q92539 896 aa18.85■□□□□ 0.61
CLCNKA-203ENST00000439316 DPF2Q92785 391 aa18.85■□□□□ 0.61
CLCNKA-203ENST00000439316 MYL10Q9BUA6 226 aa18.85■□□□□ 0.61
CLCNKA-203ENST00000439316 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.85■□□□□ 0.61
CLCNKA-203ENST00000439316 V9GYY5 206 aaPredicted RBP18.85■□□□□ 0.61
CLCNKA-203ENST00000439316 PATL2C9JE40 543 aaKnown RBP18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 CCP110O43303 1012 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 ADRA2BP18089 450 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 UBASH3AP57075 661 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 SYT10Q6XYQ8 523 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 VSTM4Q8IW00 320 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 TMX1Q9H3N1 280 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 KCNH3Q9ULD8 1083 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 COL24A1Q17RW2 1714 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 PLSCR1O15162 318 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 IFNAR1P17181 557 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 GTF2E1P29083 439 aaPredicted RBP18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 SSRP1Q08945 709 aaKnown RBP18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 LONRF3Q496Y0 759 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 CCDC152Q4G0S7 254 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 FBXO38Q6PIJ6 1188 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 OLFM4Q6UX06 510 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 IFNL3Q8IZI9 196 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 SLC26A6Q9BXS9 759 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 SEC31BQ9NQW1 1179 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 SLC12A7Q9Y666 1083 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 TACC3Q9Y6A5 838 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 MROH5Q6ZUA9 1318 aa18.84■□□□□ 0.61
CLCNKA-203ENST00000439316 UBE2Q2LH0YL09 131 aa18.83■□□□□ 0.61
CLCNKA-203ENST00000439316 SERPINC1P01008 464 aa18.83■□□□□ 0.61
CLCNKA-203ENST00000439316 NBPF5PQ86XG9 351 aaPredicted RBP18.83■□□□□ 0.61
CLCNKA-203ENST00000439316 NOSTRINQ8IVI9 506 aa18.83■□□□□ 0.61
CLCNKA-203ENST00000439316 KRI1Q8N9T8 703 aaKnown RBP18.83■□□□□ 0.61
CLCNKA-203ENST00000439316 WASF1Q92558 559 aa18.83■□□□□ 0.61
CLCNKA-203ENST00000439316 CNNM2Q9H8M5 875 aa18.83■□□□□ 0.61
CLCNKA-203ENST00000439316 INCENPQ9NQS7 918 aa18.83■□□□□ 0.61
CLCNKA-203ENST00000439316 ZSWIM5Q9P217 1185 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms