RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.36□□□□□ -0.43
CUX1-205ENST00000425244 MAGEB6Q8N7X4 407 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 C16orf45Q96MC5 204 aaPredicted RBP12.36□□□□□ -0.43
CUX1-205ENST00000425244 ALG1Q9BT22 464 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 GNL3LQ9NVN8 582 aaKnown RBP12.36□□□□□ -0.43
CUX1-205ENST00000425244 ATF5Q9Y2D1 282 aaPredicted RBP12.36□□□□□ -0.43
CUX1-205ENST00000425244 AKAP11Q9UKA4 1901 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 HIBADHP31937 336 aaKnown RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 PDE6BP35913 854 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 KIF23Q02241 960 aaPredicted RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 UBE3CQ15386 1083 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 FILIP1Q7Z7B0 1213 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 C2CD5Q86YS7 1000 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 CACTINQ8WUQ7 758 aaKnown RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 TOMM22Q9NS69 142 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 NEDD4P46934 1319 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 SH2B2O14492 632 aaPredicted RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 PPEF1O14829 653 aaPredicted RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 MBD4O95243 580 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 CTDSPL2Q05D32 466 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 ARID5BQ14865 1188 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 BRAPQ7Z569 592 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 DHX40Q8IX18 779 aaKnown RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 ZMYM6O95789 1325 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 XDHP47989 1333 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 RGPD3A6NKT7 1758 aaPredicted RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 RGPD4Q7Z3J3 1758 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 RIMBP2O15034 1052 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 TMEM67Q5HYA8 995 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 RRP12Q5JTH9 1297 aaKnown RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 ANO1Q5XXA6 986 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 PAXIP1Q6ZW49 1069 aaPredicted RBP12.35□□□□□ -0.43
CUX1-205ENST00000425244 NAPBQ9H115 298 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 ARMT1Q9H993 441 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 POLR3EQ9NVU0 708 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 RAI14Q9P0K7 980 aa12.35□□□□□ -0.43
CUX1-205ENST00000425244 A0A1W2PQ27 194 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 A0A1W2PQ64 194 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 A0A1W2PQD8 194 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 H0YIN7 160 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 BBOX1O75936 387 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 YEATS4O95619 227 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 CDC27P30260 824 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 R3HDM1Q15032 1099 aaKnown RBP12.34□□□□□ -0.43
CUX1-205ENST00000425244 CPLX2Q6PUV4 134 aaKnown RBP12.34□□□□□ -0.43
CUX1-205ENST00000425244 APOA5Q6Q788 366 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 ZNF512BQ96KM6 892 aaPredicted RBP12.34□□□□□ -0.43
CUX1-205ENST00000425244 STRBPQ96SI9 672 aaKnown RBP12.34□□□□□ -0.43
CUX1-205ENST00000425244 NAT10Q9H0A0 1025 aaKnown RBP12.34□□□□□ -0.43
CUX1-205ENST00000425244 ANKRD31Q8N7Z5 1873 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 GOLGA8AA7E2F4 631 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 ZBTB43O43298 467 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 NPR1P16066 1061 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 DPCR1Q3MIW9 517 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 ISM2Q6H9L7 571 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 MIGA1Q8NAN2 632 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 GGA1Q9UJY5 639 aa12.34□□□□□ -0.43
CUX1-205ENST00000425244 PSDA5PKW4 1024 aaPredicted RBP12.33□□□□□ -0.44
CUX1-205ENST00000425244 UBE2Q2LH0YL09 131 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 RIOK3O14730 519 aaKnown RBP12.33□□□□□ -0.44
CUX1-205ENST00000425244 CDKL5O76039 1030 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 MAP3K12Q12852 859 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 KRT40Q6A162 431 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 MAP7D2Q96T17 732 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 POLLQ9UGP5 575 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 WDR19Q8NEZ3 1342 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 TCRBV5S4A2TA0A5A2 114 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 IFIT3O14879 490 aaKnown RBP12.33□□□□□ -0.44
CUX1-205ENST00000425244 ZNF202O95125 648 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 SLC3A2P08195 630 aaKnown RBP12.33□□□□□ -0.44
CUX1-205ENST00000425244 HOXA10P31260 410 aaPredicted RBP12.33□□□□□ -0.44
CUX1-205ENST00000425244 TPD52L1Q16890 204 aaPredicted RBP12.33□□□□□ -0.44
CUX1-205ENST00000425244 SARM1Q6SZW1 724 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 MASTLQ96GX5 879 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 CRAMP1Q96RY5 1269 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 EPB41L4AQ9HCS5 686 aaPredicted RBP12.33□□□□□ -0.44
CUX1-205ENST00000425244 KIAA1468Q9P260 1216 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 CACNA1SQ13698 1873 aa12.33□□□□□ -0.44
CUX1-205ENST00000425244 MYH15Q9Y2K3 1946 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 PRKAB2O43741 272 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 PFKFB1P16118 471 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 IARSP41252 1262 aaKnown RBP12.32□□□□□ -0.44
CUX1-205ENST00000425244 TDO2P48775 406 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 TRIM29Q14134 588 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 IFNL3Q8IZI9 196 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 IPO4Q8TEX9 1081 aaKnown RBP12.32□□□□□ -0.44
CUX1-205ENST00000425244 SLC26A6Q9BXS9 759 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 TMX4Q9H1E5 349 aaPredicted RBP12.32□□□□□ -0.44
CUX1-205ENST00000425244 A0A1B0GUL6 1792 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 KLRG2A4D1S0 409 aaPredicted RBP12.32□□□□□ -0.44
CUX1-205ENST00000425244 WDHD1O75717 1129 aaPredicted RBP12.32□□□□□ -0.44
CUX1-205ENST00000425244 CDC25BP30305 580 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 ALDH1B1P30837 517 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 FBXO33Q7Z6M2 555 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 MRFAP1L1Q96HT8 127 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 ZKSCAN3Q9BRR0 538 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 SLC12A7Q9Y666 1083 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 MROH7-TTC4A0A0A0MT08 1334 aa12.32□□□□□ -0.44
CUX1-205ENST00000425244 CCDC69A6NI79 296 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 SMC2O95347 1197 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms