RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 MBD4O95243 580 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 NT5DC1Q5TFE4 455 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 CCDC150Q8NCX0 1101 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 TEX13AQ9BXU3 409 aaPredicted RBP11.38□□□□□ -0.59
SS18-203ENST00000415083 KCNH3Q9ULD8 1083 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 PARP3Q9Y6F1 533 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 LAMB2P55268 1798 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 RREB1Q92766 1687 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 ZNF34Q8IZ26 560 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 MAGEB6Q8N7X4 407 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 SLC26A6Q9BXS9 759 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 TBC1D2BQ9UPU7 963 aa11.38□□□□□ -0.59
SS18-203ENST00000415083 PATL2C9JE40 543 aaKnown RBP11.37□□□□□ -0.59
SS18-203ENST00000415083 ACTN4O43707 911 aaKnown RBP11.37□□□□□ -0.59
SS18-203ENST00000415083 MMP1P03956 469 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 SFPQP23246 707 aaKnown RBP eCLIP11.37□□□□□ -0.59
SS18-203ENST00000415083 LIFRP42702 1097 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 TAF7LQ5H9L4 462 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 TC2NQ8N9U0 490 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 ZNF384Q8TF68 577 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 WDR24Q96S15 920 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 CNNM1Q9NRU3 951 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 STK36Q9NRP7 1315 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 ANKRD18BA2A2Z9 1011 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 GOLGA8AA7E2F4 631 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 CASP1P29466 404 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 CLCN6P51797 869 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 UBASH3AP57075 661 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 MYL5Q02045 173 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 TMEM67Q5HYA8 995 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 KIF6Q6ZMV9 814 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 TOGARAM2Q6ZUX3 1019 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 NOSTRINQ8IVI9 506 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 TRMT44Q8IYL2 757 aaKnown RBP11.37□□□□□ -0.59
SS18-203ENST00000415083 SPATA5Q8NB90 893 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 SPATA20Q8TB22 786 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 TMEM87BQ96K49 555 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.37□□□□□ -0.592e-6■■□□□ 14.5
SS18-203ENST00000415083 CUTAO60888 179 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 APPP05067 770 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 CD44P16070 742 aaKnown RBP11.37□□□□□ -0.59
SS18-203ENST00000415083 IARSP41252 1262 aaKnown RBP11.37□□□□□ -0.59
SS18-203ENST00000415083 SUSD4Q5VX71 490 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 UTP14AQ9BVJ6 771 aaKnown RBP11.37□□□□□ -0.59
SS18-203ENST00000415083 SERTAD1Q9UHV2 236 aa11.37□□□□□ -0.59
SS18-203ENST00000415083 MYH13Q9UKX3 1938 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 ZRANB2O95218 330 aaKnown RBP eCLIP11.36□□□□□ -0.59
SS18-203ENST00000415083 IFNAR1P17181 557 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 FUT2Q10981 343 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 MORC3Q14149 939 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 MTF1Q14872 753 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 NPY5RQ15761 445 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 PKN1Q16512 942 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 KAT6BQ8WYB5 2073 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 PTPREP23469 700 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 PLA2G4AP47712 749 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 BCAMP50895 628 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 ETF1P62495 437 aaKnown RBP11.36□□□□□ -0.59
SS18-203ENST00000415083 DPYDQ12882 1025 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 CCDC82Q8N4S0 544 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 KIFC2Q96AC6 838 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.36□□□□□ -0.59
SS18-203ENST00000415083 SAMSN1Q9NSI8 373 aaKnown RBP11.36□□□□□ -0.59
SS18-203ENST00000415083 DUOX1Q9NRD9 1551 aa11.36□□□□□ -0.59
SS18-203ENST00000415083 SCN7AQ01118 1682 aa11.35□□□□□ -0.59
SS18-203ENST00000415083 SEC23AQ15436 765 aa11.35□□□□□ -0.59
SS18-203ENST00000415083 TRMT112Q9UI30 125 aaKnown RBP11.35□□□□□ -0.59
SS18-203ENST00000415083 COL16A1Q07092 1604 aaPredicted RBP11.35□□□□□ -0.59
SS18-203ENST00000415083 PDE8AO60658 829 aa11.35□□□□□ -0.59
SS18-203ENST00000415083 TERF2Q15554 542 aa11.35□□□□□ -0.59
SS18-203ENST00000415083 AKNAD1Q5T1N1 836 aa11.35□□□□□ -0.59
SS18-203ENST00000415083 DIS3L2Q8IYB7 885 aaKnown RBP11.35□□□□□ -0.59
SS18-203ENST00000415083 CRACR2BQ8N4Y2 399 aaPredicted RBP11.35□□□□□ -0.59
SS18-203ENST00000415083 DNAI1Q9UI46 699 aa11.35□□□□□ -0.59
SS18-203ENST00000415083 POLR2DO15514 142 aaKnown RBP11.35□□□□□ -0.59
SS18-203ENST00000415083 TADA3O75528 432 aa11.35□□□□□ -0.59
SS18-203ENST00000415083 ADKP55263 362 aaKnown RBP11.35□□□□□ -0.59
SS18-203ENST00000415083 PUM3Q15397 648 aaKnown RBP11.35□□□□□ -0.59
SS18-203ENST00000415083 LRRFIP1Q32MZ4 808 aaKnown RBP11.35□□□□□ -0.59
SS18-203ENST00000415083 STAG1Q8WVM7 1258 aa11.35□□□□□ -0.59
SS18-203ENST00000415083 MYH8P13535 1937 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 IFIT3O14879 490 aaKnown RBP11.34□□□□□ -0.59
SS18-203ENST00000415083 TEX33O43247 280 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 VEGFAP15692 232 aaPredicted RBP11.34□□□□□ -0.59
SS18-203ENST00000415083 TTF1Q15361 905 aaPredicted RBP11.34□□□□□ -0.59
SS18-203ENST00000415083 KRI1Q8N9T8 703 aaKnown RBP11.34□□□□□ -0.59
SS18-203ENST00000415083 LPIN2Q92539 896 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 IRX2Q9BZI1 471 aaPredicted RBP11.34□□□□□ -0.59
SS18-203ENST00000415083 PHLPP2Q6ZVD8 1323 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 hCG_1642624A0A1W2PR95 340 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 SASH3O75995 380 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 ABL1P00519 1130 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 INTS5Q6P9B9 1019 aaKnown RBP11.34□□□□□ -0.59
SS18-203ENST00000415083 ELOA2Q8IYF1 753 aaPredicted RBP11.34□□□□□ -0.59
SS18-203ENST00000415083 MIGA1Q8NAN2 632 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 CNNM3Q8NE01 707 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 AIDAQ96BJ3 306 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 CSRNP2Q9H175 543 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 MRPL44Q9H9J2 332 aaKnown RBP11.34□□□□□ -0.59
SS18-203ENST00000415083 TRDNQ13061 729 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms