RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 GARTP22102 1010 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 CLN3Q13286 438 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 CBX2Q14781 532 aaPredicted RBP3.38□□□□□ -1.87
MCF2-204ENST00000414978 LRRC41Q15345 812 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 SPRED3Q2MJR0 410 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 NBPF1Q3BBV0 1214 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 GORABQ5T7V8 394 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 MPRIPQ6WCQ1 1025 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 CCDC146Q8IYE0 955 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 SLC4A9Q96Q91 983 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 MYH16Q9H6N6 1097 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 ANTXR1Q9H6X2 564 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 CDV3Q9UKY7 258 aaKnown RBP3.38□□□□□ -1.87
MCF2-204ENST00000414978 EID1Q9Y6B2 187 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 ASMTLO95671 621 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 IFRD2Q12894 506 aaPredicted RBP3.38□□□□□ -1.87
MCF2-204ENST00000414978 C6orf15Q6UXA7 325 aaPredicted RBP3.38□□□□□ -1.87
MCF2-204ENST00000414978 TRMT44Q8IYL2 757 aaKnown RBP3.38□□□□□ -1.87
MCF2-204ENST00000414978 FBF1Q8TES7 1133 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 ZCCHC2Q9C0B9 1178 aaKnown RBP3.38□□□□□ -1.87
MCF2-204ENST00000414978 CASS4Q9NQ75 786 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 KAT6BQ8WYB5 2073 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 CCNB3Q8WWL7 1395 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 SOS2Q07890 1332 aaPredicted RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 PPLO60437 1756 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 TK2O00142 265 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 DIAPH1O60610 1272 aaKnown RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 RAB33AQ14088 237 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 GNASQ5JWF2 1037 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 SERINC2Q96SA4 455 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 ZNF700Q9H0M5 742 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 PGPEP1Q9NXJ5 209 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 ABI2Q9NYB9 513 aaPredicted RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 PCDHB5Q9Y5E4 795 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 KIF1BO60333 1816 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 J3QL48 77 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 ADH1AP07327 375 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 CTSOP43234 321 aaPredicted RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 RALBP1Q15311 655 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 BTLAQ7Z6A9 289 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 THNSL2Q86YJ6 484 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 SRRTQ9BXP5 876 aaKnown RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 PHRF1Q9P1Y6 1649 aaKnown RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 QRICH2Q9H0J4 1663 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 EYA4O95677 639 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 MYCLP1P12525 358 aaPredicted RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 ITGAEP38570 1179 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 TTC39BQ5VTQ0 682 aaPredicted RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 ATXN2LQ8WWM7 1075 aaKnown RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 LRRC59Q96AG4 307 aaKnown RBP3.37□□□□□ -1.87
MCF2-204ENST00000414978 MYO19Q96H55 970 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 AKAP12Q02952 1782 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 C1orf167Q5SNV9 1468 aa3.37□□□□□ -1.87
MCF2-204ENST00000414978 RIMS2Q9UQ26 1411 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 PHF20L1A8MW92 1017 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 J3QW42 95 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 YY1P25490 414 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 MTFR1Q15390 333 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 PRPF40BQ6NWY9 871 aaKnown RBP3.36□□□□□ -1.87
MCF2-204ENST00000414978 SLC4A10Q6U841 1118 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 SKAP1Q86WV1 359 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 RBSNQ9H1K0 784 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 BRD7Q9NPI1 651 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 PTPRUQ92729 1446 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 TGFBR3LH3BV60 316 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 CDK2AP1O14519 115 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 F13A1P00488 732 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 TATP17735 454 aaPredicted RBP3.36□□□□□ -1.87
MCF2-204ENST00000414978 MASP1P48740 699 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 SSRP1Q08945 709 aaKnown RBP3.36□□□□□ -1.87
MCF2-204ENST00000414978 CAMK2GQ13555 558 aaPredicted RBP3.36□□□□□ -1.87
MCF2-204ENST00000414978 TTBK2Q6IQ55 1244 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 PPP4R4Q6NUP7 873 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 RIPOR1Q6ZS17 1223 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 BRINP3Q76B58 766 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 KRT26Q7Z3Y9 468 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 NBPF15Q8N660 670 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 TMEM74Q96NL1 305 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 PNMA5Q96PV4 448 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 C19orf44Q9H6X5 657 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 ZFYVE28Q9HCC9 887 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 KDM2BQ8NHM5 1336 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 TTC24A2A3L6 582 aaPredicted RBP3.36□□□□□ -1.87
MCF2-204ENST00000414978 RBAK-RBAKDNI3L0D1 243 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 BMP1P13497 986 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 GSTT1P30711 240 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 GRIA4P48058 902 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 HSP90AB4PQ58FF6 505 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 PEAR1Q5VY43 1037 aaPredicted RBP3.36□□□□□ -1.87
MCF2-204ENST00000414978 ZCRB1Q8TBF4 217 aaKnown RBP3.36□□□□□ -1.87
MCF2-204ENST00000414978 MORC4Q8TE76 937 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 RHBDD1Q8TEB9 315 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 APPBP2Q92624 585 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 FNDC3AQ9Y2H6 1198 aaKnown RBP3.36□□□□□ -1.87
MCF2-204ENST00000414978 KCNMB2Q9Y691 235 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 WASHC2CQ9Y4E1 1318 aa3.36□□□□□ -1.87
MCF2-204ENST00000414978 KATNA1O75449 491 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 CD2BP2O95400 341 aaKnown RBP3.35□□□□□ -1.87
MCF2-204ENST00000414978 BMP2P12643 396 aa3.35□□□□□ -1.87
MCF2-204ENST00000414978 L1CAMP32004 1257 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms