RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 KLHL7Q8IXQ5 586 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 CDK5RAP3Q96JB5 506 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 MRPL44Q9H9J2 332 aaKnown RBP10.44□□□□□ -0.74
COL28A1-201ENST00000399429 IRAK4Q9NWZ3 460 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 ENO4A6NNW6 628 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 EXOC5O00471 708 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 KCNJ6P48051 423 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 ARMC2Q8NEN0 867 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 EEF2KMTQ96G04 330 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 YIPF3Q9GZM5 350 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 ZHX3Q9H4I2 956 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 PAG1Q9NWQ8 432 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 SBNO2Q9Y2G9 1366 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 UBE4AQ14139 1066 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 SAAL1Q96ER3 474 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 DBNDD2Q9BQY9 259 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 HAUS4Q9H6D7 363 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 CABP5Q9NP86 173 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 HDAC6Q9UBN7 1215 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 L1RE1Q9UN81 338 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 ZFYVE9O95405 1425 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 DUOX2Q9NRD8 1548 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 E7EWF7 191 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 PDIA3P30101 505 aaKnown RBP10.43□□□□□ -0.74
COL28A1-201ENST00000399429 TBC1D8BQ0IIM8 1120 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 NBPF14Q5TI25 921 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 GKAP1Q5VSY0 366 aaPredicted RBP10.43□□□□□ -0.74
COL28A1-201ENST00000399429 NOA1Q8NC60 698 aaKnown RBP10.43□□□□□ -0.74
COL28A1-201ENST00000399429 COG1Q8WTW3 980 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 ADGRG1Q9Y653 693 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 ADGRL1O94910 1474 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 SMIM24O75264 130 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 GIGYF1O75420 1035 aaPredicted RBP10.43□□□□□ -0.74
COL28A1-201ENST00000399429 ERCC3P19447 782 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 CXCR5P32302 372 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 ZC3H6P61129 1189 aaKnown RBP10.43□□□□□ -0.74
COL28A1-201ENST00000399429 PAK2Q13177 524 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 CCDC57Q2TAC2 916 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 CCDC93Q567U6 631 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 AMOTL1Q8IY63 956 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 SMYD4Q8IYR2 804 aaPredicted RBP10.43□□□□□ -0.74
COL28A1-201ENST00000399429 OR8K1Q8NGG5 319 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 NAPBQ9H115 298 aa10.43□□□□□ -0.74
COL28A1-201ENST00000399429 SEPT11Q9NVA2 429 aaKnown RBP10.43□□□□□ -0.74
COL28A1-201ENST00000399429 TLR7Q9NYK1 1049 aaKnown RBP10.43□□□□□ -0.74
COL28A1-201ENST00000399429 ADGBQ8N7X0 1667 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 TRIM75PA6NK02 468 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 TEX11Q8IYF3 940 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 MYL10Q9BUA6 226 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 NSRP1Q9H0G5 558 aaKnown RBP10.42□□□□□ -0.74
COL28A1-201ENST00000399429 KIAA0232Q92628 1395 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 ATP11AP98196 1134 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 THOC1Q96FV9 657 aaKnown RBP10.42□□□□□ -0.74
COL28A1-201ENST00000399429 TTC21BQ7Z4L5 1316 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 LRRIQ3A6PVS8 624 aaPredicted RBP10.42□□□□□ -0.74
COL28A1-201ENST00000399429 MEFVO15553 781 aaPredicted RBP10.42□□□□□ -0.74
COL28A1-201ENST00000399429 SKAP2O75563 359 aaPredicted RBP10.42□□□□□ -0.74
COL28A1-201ENST00000399429 ADD1P35611 737 aaKnown RBP10.42□□□□□ -0.74
COL28A1-201ENST00000399429 MYO1EQ12965 1108 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 KRT71Q3SY84 523 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 SUGP1Q8IWZ8 645 aaKnown RBP10.42□□□□□ -0.74
COL28A1-201ENST00000399429 ANKRD13CQ8N6S4 541 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 CCDC51Q96ER9 411 aa10.42□□□□□ -0.74
COL28A1-201ENST00000399429 CALR3Q96L12 384 aaKnown RBP10.42□□□□□ -0.74
COL28A1-201ENST00000399429 PSMA7O14818 248 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 TIMM10P62072 90 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 GUCY2DQ02846 1103 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 SLC39A14Q15043 492 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 KSR2Q6VAB6 950 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 FBF1Q8TES7 1133 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 SIRT1Q96EB6 747 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 PLIN2Q99541 437 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 TRIM31Q9BZY9 425 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 BLZF1Q9H2G9 400 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 POLR3EQ9NVU0 708 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 FAM184BQ9ULE4 1060 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 MINDY4BA8MYZ0 360 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 PPP1R12AO14974 1030 aaPredicted RBP10.41□□□□□ -0.74
COL28A1-201ENST00000399429 NR1D1P20393 614 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 TRIM14Q14142 442 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 TRIM65Q6PJ69 517 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 LMNTD2Q8IXW0 634 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 DIS3L2Q8IYB7 885 aaKnown RBP10.41□□□□□ -0.74
COL28A1-201ENST00000399429 SH2D3CQ8N5H7 860 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 CCDC63Q8NA47 563 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 NACAP1Q9BZK3 213 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 TPX2Q9ULW0 747 aaKnown RBP10.41□□□□□ -0.74
COL28A1-201ENST00000399429 CARMIL3Q8ND23 1372 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 ALDH1L1O75891 902 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 UBA7P41226 1012 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 MXRA7P84157 204 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 SEPT7Q16181 437 aaKnown RBP10.41□□□□□ -0.74
COL28A1-201ENST00000399429 TEX33O43247 280 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 TFRCP02786 760 aaKnown RBP10.41□□□□□ -0.74
COL28A1-201ENST00000399429 PAX7P23759 505 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 CTNNA1P35221 906 aaKnown RBP10.41□□□□□ -0.74
COL28A1-201ENST00000399429 GUCY1A3Q02108 690 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 RUFY4Q6ZNE9 571 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 CNNM1Q9NRU3 951 aa10.41□□□□□ -0.74
COL28A1-201ENST00000399429 KCNJ14Q9UNX9 436 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms