RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 MICU3Q86XE3 530 aa10.13□□□□□ -0.79
TDP1-203ENST00000393454 CCDC144CPQ8IYA2 1237 aa10.13□□□□□ -0.79
TDP1-203ENST00000393454 LARGE2Q8N3Y3 721 aa10.13□□□□□ -0.79
TDP1-203ENST00000393454 TEKT1Q969V4 418 aa10.13□□□□□ -0.79
TDP1-203ENST00000393454 CHAMP1Q96JM3 812 aa10.13□□□□□ -0.79
TDP1-203ENST00000393454 ZNF277Q9NRM2 450 aaPredicted RBP10.13□□□□□ -0.79
TDP1-203ENST00000393454 HPS5Q9UPZ3 1129 aa10.13□□□□□ -0.79
TDP1-203ENST00000393454 KIF3AQ9Y496 699 aa10.13□□□□□ -0.79
TDP1-203ENST00000393454 H3BQV1 296 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 F13A1P00488 732 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 PDIA4P13667 645 aaKnown RBP10.12□□□□□ -0.79
TDP1-203ENST00000393454 PICALMQ13492 652 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 DACT2Q5SW24 774 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 SOGA3Q5TF21 947 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 IFFO2Q5TF58 517 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 SGMS1Q86VZ5 419 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 IQCA1Q86XH1 822 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 TMTC2Q8N394 836 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 SMARCC2Q8TAQ2 1214 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 DYNLL2Q96FJ2 89 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 PSMD1Q99460 953 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 MYL10Q9BUA6 226 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 MKNK2Q9HBH9 465 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 USP40Q9NVE5 1235 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 MKRN1Q9UHC7 482 aaKnown RBP10.12□□□□□ -0.79
TDP1-203ENST00000393454 MTMR6Q9Y217 621 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 CDK5RAP2Q96SN8 1893 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 FLT1P17948 1338 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 SNED1Q8TER0 1413 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 SCN9AQ15858 1988 aa10.12□□□□□ -0.79
TDP1-203ENST00000393454 GOLGA8AA7E2F4 631 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 ORC4O43929 436 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 TRAK2O60296 914 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 FGRP09769 529 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 CRKP46108 304 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 FAM47AQ5JRC9 791 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 APOA5Q6Q788 366 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 HHIPL2Q6UWX4 724 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 ZSCAN10Q96SZ4 725 aaPredicted RBP10.11□□□□□ -0.79
TDP1-203ENST00000393454 MTA3Q9BTC8 594 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.11□□□□□ -0.79
TDP1-203ENST00000393454 ATP6V1DQ9Y5K8 247 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 TNKSO95271 1327 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 TSPY2A6NKD2 308 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 PLCD1P51178 756 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 FKBP1AP62942 108 aaKnown RBP10.11□□□□□ -0.79
TDP1-203ENST00000393454 CPLX2Q6PUV4 134 aaKnown RBP10.11□□□□□ -0.79
TDP1-203ENST00000393454 FERMT3Q86UX7 667 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 NUP133Q8WUM0 1156 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 MYH1P12882 1939 aa10.11□□□□□ -0.79
TDP1-203ENST00000393454 YDJCA8MPS7 323 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 PRPF40AO75400 957 aaKnown RBP10.1□□□□□ -0.79
TDP1-203ENST00000393454 ADD1P35611 737 aaKnown RBP10.1□□□□□ -0.79
TDP1-203ENST00000393454 IFIT1BQ5T764 474 aaKnown RBP10.1□□□□□ -0.79
TDP1-203ENST00000393454 CDC37L1Q7L3B6 337 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 ADAMTSL1Q8N6G6 1762 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 RAD17O75943 681 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 CDKL5O76039 1030 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 NCLP19338 710 aaKnown RBP10.1□□□□□ -0.79
TDP1-203ENST00000393454 TFAP4Q01664 338 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 CDC42EP5Q6NZY7 148 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 NIM1KQ8IY84 436 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 ZNF654Q8IZM8 581 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 ZNF444Q8N0Y2 327 aaPredicted RBP10.1□□□□□ -0.79
TDP1-203ENST00000393454 ENAHQ8N8S7 591 aaPredicted RBP10.1□□□□□ -0.79
TDP1-203ENST00000393454 ZNF287Q9HBT7 754 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 ORC3Q9UBD5 711 aaPredicted RBP10.1□□□□□ -0.79
TDP1-203ENST00000393454 TAOK2Q9UL54 1235 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 BCS1LQ9Y276 419 aa10.1□□□□□ -0.79
TDP1-203ENST00000393454 NMT2O60551 498 aa10.09□□□□□ -0.79
TDP1-203ENST00000393454 CDC27P30260 824 aa10.09□□□□□ -0.79
TDP1-203ENST00000393454 SEC23AQ15436 765 aa10.09□□□□□ -0.79
TDP1-203ENST00000393454 RTN1Q16799 776 aa10.09□□□□□ -0.79
TDP1-203ENST00000393454 SKOR2Q2VWA4 1001 aaPredicted RBP10.09□□□□□ -0.79
TDP1-203ENST00000393454 APOBEC3HQ6NTF7 200 aaKnown RBP10.09□□□□□ -0.79
TDP1-203ENST00000393454 CATIPQ7Z7H3 387 aa10.09□□□□□ -0.79
TDP1-203ENST00000393454 SLC44A5Q8NCS7 719 aa10.09□□□□□ -0.79
TDP1-203ENST00000393454 PCDHAC2Q9Y5I4 1007 aa10.09□□□□□ -0.79
TDP1-203ENST00000393454 CD2APQ9Y5K6 639 aa10.09□□□□□ -0.79
TDP1-203ENST00000393454 TSPY3P0CV98 308 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 TSPY8P0CW00 308 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 FDPSP14324 419 aaKnown RBP10.08□□□□□ -0.8
TDP1-203ENST00000393454 IARSP41252 1262 aaKnown RBP10.08□□□□□ -0.8
TDP1-203ENST00000393454 CDK8P49336 464 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 HDLBPQ00341 1268 aaKnown RBP10.08□□□□□ -0.8
TDP1-203ENST00000393454 GUCY1B3Q02153 619 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 ZDHHC15Q96MV8 337 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 MRIQ9BWK5 157 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 GZF1Q9H116 711 aaPredicted RBP10.08□□□□□ -0.8
TDP1-203ENST00000393454 VPS33BQ9H267 617 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 CNPY2Q9Y2B0 182 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 TCHHQ07283 1943 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 FOCADQ5VW36 1801 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 ROBO3Q96MS0 1386 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 PSMD14O00487 310 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 WDHD1O75717 1129 aaPredicted RBP10.08□□□□□ -0.8
TDP1-203ENST00000393454 RSBN1LQ6PCB5 846 aaPredicted RBP10.08□□□□□ -0.8
TDP1-203ENST00000393454 TTC6Q86TZ1 520 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 PHKBQ93100 1093 aa10.08□□□□□ -0.8
TDP1-203ENST00000393454 SGIP1Q9BQI5 828 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms