RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 USP17L15C9J2P7 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L13C9JLJ4 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L11C9JVI0 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L18D6R9N7 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L22D6RA61 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L17D6RBQ6 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L19D6RCP7 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L20D6RJB6 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L24Q0WX57 530 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 TMTC2Q8N394 836 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 KCNG4Q8TDN1 519 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 LRRCC1Q9C099 1032 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 CD209Q9NNX6 404 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 ADCY9O60503 1353 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 SMARCA5O60264 1052 aaPredicted RBP9.43□□□□□ -0.9
LIMS1-203ENST00000393310 IDH1O75874 414 aaKnown RBP9.43□□□□□ -0.9
LIMS1-203ENST00000393310 TCP10Q12799 353 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 ATXN8OSP0DMR3 200 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 EXOC4Q96A65 974 aa9.43□□□□□ -0.9
LIMS1-203ENST00000393310 CPSF2Q9P2I0 782 aaKnown RBP9.43□□□□□ -0.9
LIMS1-203ENST00000393310 ZNF500O60304 480 aaPredicted RBP9.42□□□□□ -0.9
LIMS1-203ENST00000393310 SATB1Q01826 763 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CCDC96Q2M329 555 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 FKBP1CQ5VVH2 108 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 KIAA1211Q6ZU35 1233 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 OTOP1Q7RTM1 612 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 ZNF34Q8IZ26 560 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 IL17REQ8NFR9 667 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 RIPOR2Q9Y4F9 1068 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CARNS1A5YM72 827 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CCDC175P0C221 793 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CCL5P13501 91 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 PDE4BQ07343 736 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 PDILTQ8N807 584 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CHURC1Q8WUH1 139 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 FAM151AQ8WW52 585 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CPA4Q9UI42 421 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CICQ96RK0 1608 aaPredicted RBP9.42□□□□□ -0.9
LIMS1-203ENST00000393310 PDHXO00330 501 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 PEX14O75381 377 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 PTPN12Q05209 780 aaKnown RBP9.42□□□□□ -0.9
LIMS1-203ENST00000393310 BFSP2Q13515 415 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 PSRC1Q6PGN9 363 aaPredicted RBP9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CCDC17Q96LX7 622 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 ZNF70Q9UC06 446 aaPredicted RBP9.42□□□□□ -0.9
LIMS1-203ENST00000393310 HERC5Q9UII4 1024 aaKnown RBP9.42□□□□□ -0.9
LIMS1-203ENST00000393310 RAB23Q9ULC3 237 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 TRIM75PA6NK02 468 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 GRM8O00222 908 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 EFCAB14O75071 495 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 ENTPD3O75355 529 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 CABYRO75952 493 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 SLC34A2O95436 690 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 FAM83AQ86UY5 434 aa9.42□□□□□ -0.9
LIMS1-203ENST00000393310 EDC3Q96F86 508 aaKnown RBP9.42□□□□□ -0.9
LIMS1-203ENST00000393310 SLC25A27O95847 323 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 HOXC6P09630 235 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 USP8P40818 1118 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 GPS2Q13227 327 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 TACC3Q9Y6A5 838 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 ABCC12Q96J65 1359 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 APAF1O14727 1248 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 KIF4AO95239 1232 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 CT47B1P0C2W7 299 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-203ENST00000393310 ZNF853P0CG23 659 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 DEFB123Q8N688 67 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 FAM200AQ8TCP9 573 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 COG6Q9Y2V7 657 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 FSD2A1L4K1 749 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 FCER1AP12319 257 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 CHRNDQ07001 517 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 FLIIQ13045 1269 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 TESK2Q96S53 571 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 PI4KBQ9UBF8 816 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 ZMYND8Q9ULU4 1186 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-203ENST00000393310 MED23Q9ULK4 1368 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 CHD4Q14839 1912 aa9.41□□□□□ -0.9
LIMS1-203ENST00000393310 GOLGA6L19H0YKK7 550 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 RAB3GAP1Q15042 981 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 PPP4R2Q9NY27 417 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 IFT172Q9UG01 1749 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 USP17L10C9JJH3 530 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 CTNND1O60716 968 aaKnown RBP9.4□□□□□ -0.9
LIMS1-203ENST00000393310 TM4SF4P48230 202 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 NCBP1Q09161 790 aaKnown RBP9.4□□□□□ -0.9
LIMS1-203ENST00000393310 ANKRD35Q8N283 1001 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 TRPM4Q8TD43 1214 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 OSBPL5Q9H0X9 879 aaPredicted RBP9.4□□□□□ -0.9
LIMS1-203ENST00000393310 LRFN2Q9ULH4 789 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 ITGBL1O95965 494 aaPredicted RBP9.4□□□□□ -0.9
LIMS1-203ENST00000393310 PKN1Q16512 942 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 PRAMEF18Q5VWM3 479 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 DZIP1LQ8IYY4 767 aaKnown RBP9.4□□□□□ -0.9
LIMS1-203ENST00000393310 CXorf38Q8TB03 319 aa9.4□□□□□ -0.9
LIMS1-203ENST00000393310 ZNF830Q96NB3 372 aaPredicted RBP9.4□□□□□ -0.9
LIMS1-203ENST00000393310 XIRP1Q702N8 1843 aaKnown RBP9.4□□□□□ -0.9
LIMS1-203ENST00000393310 RPTORQ8N122 1335 aa9.4□□□□□ -0.91
LIMS1-203ENST00000393310 MYO5BQ9ULV0 1848 aa9.4□□□□□ -0.91
LIMS1-203ENST00000393310 GNAT1P11488 350 aa9.4□□□□□ -0.91
LIMS1-203ENST00000393310 TEX35Q5T0J7 233 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms