RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 ADAM21Q9UKJ8 722 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 ANGEL1Q9UNK9 670 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 MROH5Q6ZUA9 1318 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 DHX16O60231 1041 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 UQCRFS1P1P0C7P4 283 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 GNG11P61952 73 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 UBXN6Q9BZV1 441 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 CAMTA2O94983 1202 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 NCAPHQ15003 741 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 LINC00301Q8NCQ3 95 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 PARD6BQ9BYG5 372 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 ARFGAP3Q9NP61 516 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 MYH3P11055 1940 aa20.27■□□□□ 0.84
SQSTM1-202ENST00000389805 SERPINC1P01008 464 aa20.27■□□□□ 0.84
SQSTM1-202ENST00000389805 SLC3A2P08195 630 aaKnown RBP20.27■□□□□ 0.84
SQSTM1-202ENST00000389805 SLC5A1P13866 664 aa20.27■□□□□ 0.84
SQSTM1-202ENST00000389805 CFAP100Q494V2 611 aa20.27■□□□□ 0.84
SQSTM1-202ENST00000389805 H3BQF6 201 aa20.27■□□□□ 0.83
SQSTM1-202ENST00000389805 STK38Q15208 465 aa20.27■□□□□ 0.83
SQSTM1-202ENST00000389805 IFNL3Q8IZI9 196 aa20.27■□□□□ 0.83
SQSTM1-202ENST00000389805 RTEL1Q9NZ71 1219 aa20.27■□□□□ 0.83
SQSTM1-202ENST00000389805 MYH7P12883 1935 aa20.26■□□□□ 0.83
SQSTM1-202ENST00000389805 TMEM232C9JQI7 657 aa20.26■□□□□ 0.83
SQSTM1-202ENST00000389805 SH2B2O14492 632 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-202ENST00000389805 METAP2P50579 478 aaKnown RBP eCLIP20.26■□□□□ 0.83
SQSTM1-202ENST00000389805 UBASH3AP57075 661 aa20.26■□□□□ 0.83
SQSTM1-202ENST00000389805 MIGA1Q8NAN2 632 aa20.26■□□□□ 0.83
SQSTM1-202ENST00000389805 MYSM1Q5VVJ2 828 aa20.26■□□□□ 0.83
SQSTM1-202ENST00000389805 SPATA31A1Q5TZJ5 1347 aa20.26■□□□□ 0.83
SQSTM1-202ENST00000389805 PPP2R3AQ06190 1150 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 APOA5Q6Q788 366 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 ZKSCAN3Q9BRR0 538 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 ZSWIM5Q9P217 1185 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 VWA3AA6NCI4 1184 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 NFXL1Q6ZNB6 911 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 IGDCC4Q8TDY8 1250 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 AK7Q96M32 723 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 SRRTQ9BXP5 876 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 COL14A1Q05707 1796 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 CASQ1P31415 396 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 MCM6Q14566 821 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 RRP12Q5JTH9 1297 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 CHMP4CQ96CF2 233 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 FUT8Q9BYC5 575 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 NAPBQ9H115 298 aa20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 RRP15Q9Y3B9 282 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-202ENST00000389805 PATL2C9JE40 543 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 MARCKSP29966 332 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 KIF23Q02241 960 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 MAP3K12Q12852 859 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 ATL3Q6DD88 541 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 ADALQ6DHV7 355 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 LCORLQ8N3X6 602 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 PDILTQ8N807 584 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 ALG1Q9BT22 464 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 ANKRD36CQ5JPF3 1778 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 ANKRD65E5RJM6 399 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 SMIM22K7EJ46 135 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 TOMM22Q9NS69 142 aa20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 CWC15Q9P013 229 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-202ENST00000389805 COL16A1Q07092 1604 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 GSG1L2A8MUP6 293 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 ZNF202O95125 648 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 TMEM67Q5HYA8 995 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 PAXIP1Q6ZW49 1069 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 SRLQ86TD4 932 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 PPP2R2CQ9Y2T4 447 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 CCP110O43303 1012 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 NTSR2O95665 410 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 TPM1P09493 284 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 KCNJ6P48051 423 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 NLRP12P59046 1061 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 CHRNDQ07001 517 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 CCDC152Q4G0S7 254 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 FOXR1Q6PIV2 292 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 SYNE3Q6ZMZ3 975 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 C3orf67Q6ZVT6 689 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 GPR161Q8N6U8 529 aaKnown RBP20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 LY9Q9HBG7 655 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 VPS18Q9P253 973 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 ZMYM6O95789 1325 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 DOT1LQ8TEK3 1739 aa20.23■□□□□ 0.83
SQSTM1-202ENST00000389805 SPTLC2O15270 562 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 TUBB4AP04350 444 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 KARSQ15046 597 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 CCDC82Q8N4S0 544 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 FAM217BQ9NTX9 383 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 ATRNO75882 1429 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 MYH15Q9Y2K3 1946 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 IGHMBP2P38935 993 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 LONRF2Q1L5Z9 754 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 GOLGA5Q8TBA6 731 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 HSD3B7Q9H2F3 369 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 ROBO1Q9Y6N7 1651 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 ATP8B1O43520 1251 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 RANBP6O60518 1105 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 TOP1P11387 765 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 NOP2P46087 812 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 BICDL1Q6ZP65 573 aa20.22■□□□□ 0.83
SQSTM1-202ENST00000389805 IFIT3O14879 490 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms