RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 LCORLQ8N3X6 602 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 SPATA5Q8NB90 893 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 TMEM87BQ96K49 555 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 INTS13Q9NVM9 706 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 CASQ1P31415 396 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 TOB1P50616 345 aaPredicted RBP13.9□□□□□ -0.18
CLIP3-201ENST00000360535 RASGRF1Q13972 1273 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 FBXL16Q8N461 479 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 MAP3K15Q6ZN16 1313 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 AKAP17AQ02040 695 aaKnown RBP13.89□□□□□ -0.19
CLIP3-201ENST00000360535 BMS1Q14692 1282 aaKnown RBP13.89□□□□□ -0.19
CLIP3-201ENST00000360535 VPS54Q9P1Q0 977 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 PATL2C9JE40 543 aaKnown RBP13.89□□□□□ -0.19
CLIP3-201ENST00000360535 UBE3CQ15386 1083 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 TIGD1Q96MW7 591 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 L2HGDHQ9H9P8 463 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 MST1RQ04912 1400 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 TNS3Q68CZ2 1445 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 SART3Q15020 963 aaKnown RBP13.89□□□□□ -0.19
CLIP3-201ENST00000360535 AKNAD1Q5T1N1 836 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 TRIM65Q6PJ69 517 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 REXO1L1PQ8IX06 675 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 NOL10Q9BSC4 688 aaKnown RBP13.89□□□□□ -0.19
CLIP3-201ENST00000360535 UBAC1Q9BSL1 405 aa13.89□□□□□ -0.19
CLIP3-201ENST00000360535 HOOK1Q9UJC3 728 aaKnown RBP13.89□□□□□ -0.19
CLIP3-201ENST00000360535 ADAMTS7Q9UKP4 1686 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 ZSCAN12O43309 604 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 GABPB1Q06547 395 aaPredicted RBP13.88□□□□□ -0.19
CLIP3-201ENST00000360535 DZIP3Q86Y13 1208 aaKnown RBP13.88□□□□□ -0.19
CLIP3-201ENST00000360535 EPSTI1Q96J88 318 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 CSRNP2Q9H175 543 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 MTMR7Q9Y216 660 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 RIC1Q4ADV7 1423 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 CYP2D7A0A087X1C5 515 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 CCDC12Q8WUD4 166 aaPredicted RBP13.88□□□□□ -0.19
CLIP3-201ENST00000360535 ZCCHC17Q9NP64 241 aaKnown RBP13.88□□□□□ -0.19
CLIP3-201ENST00000360535 ARGLU1Q9NWB6 273 aaPredicted RBP13.88□□□□□ -0.19
CLIP3-201ENST00000360535 ABCC6O95255 1503 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 A0A0U1RQJ8 604 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 TEX33O43247 280 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 MMP1P03956 469 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 ATRIPQ8WXE1 791 aa13.88□□□□□ -0.19
CLIP3-201ENST00000360535 VWA3AA6NCI4 1184 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 GSG1L2A8MUP6 293 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 CCP110O43303 1012 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 PNMA6AP0CW24 399 aaPredicted RBP13.87□□□□□ -0.19
CLIP3-201ENST00000360535 PUM3Q15397 648 aaKnown RBP13.87□□□□□ -0.19
CLIP3-201ENST00000360535 CCDC93Q567U6 631 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 RAI14Q9P0K7 980 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 PUF60Q9UHX1 559 aaKnown RBP13.87□□□□□ -0.19
CLIP3-201ENST00000360535 CAMTA1Q9Y6Y1 1673 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 WTIPA6NIX2 430 aaPredicted RBP13.87□□□□□ -0.19
CLIP3-201ENST00000360535 SOWAHDA6NJG2 315 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 FMNL1O95466 1100 aaPredicted RBP13.87□□□□□ -0.19
CLIP3-201ENST00000360535 SLC5A1P13866 664 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 ZNF174Q15697 407 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 BRINP3Q76B58 766 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 NACAP1Q9BZK3 213 aa13.87□□□□□ -0.19
CLIP3-201ENST00000360535 PES1O00541 588 aaKnown RBP13.86□□□□□ -0.19
CLIP3-201ENST00000360535 ZBTB22O15209 634 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 LPIN2Q92539 896 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 MAPK8IP1Q9UQF2 711 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 KIF1AQ12756 1690 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 ARHGAP6O43182 974 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 PDE8AO60658 829 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 UQCRFS1P1P0C7P4 283 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 CYP7A1P22680 504 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 CCT6AP40227 531 aaKnown RBP13.86□□□□□ -0.19
CLIP3-201ENST00000360535 NOM1Q5C9Z4 860 aaKnown RBP13.86□□□□□ -0.19
CLIP3-201ENST00000360535 SPECC1LQ69YQ0 1117 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 TCRBV5S4A2TA0A5A2 114 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 H2AFXP16104 143 aaPredicted RBP13.86□□□□□ -0.19
CLIP3-201ENST00000360535 FBXO2Q9UK22 296 aaPredicted RBP13.86□□□□□ -0.19
CLIP3-201ENST00000360535 FBXO3Q9UK99 471 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 FHOD1Q9Y613 1164 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 PARP3Q9Y6F1 533 aa13.86□□□□□ -0.19
CLIP3-201ENST00000360535 GYS2P54840 703 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 TRIM28Q13263 835 aaKnown RBP13.85□□□□□ -0.19
CLIP3-201ENST00000360535 MAPK8IP2Q13387 824 aaPredicted RBP13.85□□□□□ -0.19
CLIP3-201ENST00000360535 ZNF654Q8IZM8 581 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 VGLL2Q8N8G2 317 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 WASF1Q92558 559 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 BLZF1Q9H2G9 400 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 V9GY48 417 aaPredicted RBP13.85□□□□□ -0.19
CLIP3-201ENST00000360535 TJP1Q07157 1748 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 TFRCP02786 760 aaKnown RBP13.85□□□□□ -0.19
CLIP3-201ENST00000360535 IFNAR1P17181 557 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 PPP2R3AQ06190 1150 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 TC2NQ8N9U0 490 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 FANCBQ8NB91 859 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 SLC4A9Q96Q91 983 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 KRT23Q9C075 422 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 EARS2Q5JPH6 523 aaKnown RBP13.85□□□□□ -0.19
CLIP3-201ENST00000360535 SGMS1Q86VZ5 419 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 PPFIBP1Q86W92 1011 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 BBXQ8WY36 941 aaPredicted RBP13.85□□□□□ -0.19
CLIP3-201ENST00000360535 CARD10Q9BWT7 1032 aa13.85□□□□□ -0.19
CLIP3-201ENST00000360535 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.85□□□□□ -0.19
CLIP3-201ENST00000360535 PTPREP23469 700 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 RILPL1Q5EBL4 403 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms