RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 WASF1Q92558 559 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 MROH7-TTC4A0A0A0MT08 1334 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 REREQ9P2R6 1566 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 CCDC194A0A1B0GVG4 234 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 ZSCAN12O43309 604 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 TFRCP02786 760 aaKnown RBP13.6□□□□□ -0.23
USP1-201ENST00000339950 SLC39A14Q15043 492 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 DDB1Q16531 1140 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 HSP90B2PQ58FF3 399 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 GIGYF2Q6Y7W6 1299 aaKnown RBP13.6□□□□□ -0.23
USP1-201ENST00000339950 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.6□□□□□ -0.23
USP1-201ENST00000339950 NOSTRINQ8IVI9 506 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 CCDC196A0A1B0GTZ2 297 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 ZPR1O75312 459 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 PLEKHA8P1O95397 391 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 CAVIN2O95810 425 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 CYP2D6P10635 497 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 KIAA1328Q86T90 577 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 ZNF397Q8NF99 534 aaPredicted RBP13.59□□□□□ -0.23
USP1-201ENST00000339950 MRFAP1L1Q96HT8 127 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 SLF1Q9BQI6 1058 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 RNASE9P60153 205 aaKnown RBP13.59□□□□□ -0.23
USP1-201ENST00000339950 RABL6Q3YEC7 729 aaPredicted RBP13.59□□□□□ -0.23
USP1-201ENST00000339950 NOM1Q5C9Z4 860 aaKnown RBP13.59□□□□□ -0.23
USP1-201ENST00000339950 LPIN2Q92539 896 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 ZNF335Q9H4Z2 1342 aaPredicted RBP13.59□□□□□ -0.23
USP1-201ENST00000339950 YEATS4O95619 227 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 PCCAP05165 728 aaPredicted RBP13.59□□□□□ -0.23
USP1-201ENST00000339950 CMA1P23946 247 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 TXLNAP40222 546 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 UBA7P41226 1012 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 PDE4BQ07343 736 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 KMT5BQ4FZB7 885 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 NBPF5PQ86XG9 351 aaPredicted RBP13.59□□□□□ -0.23
USP1-201ENST00000339950 CERS3Q8IU89 383 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 MB21D2Q8IYB1 491 aaPredicted RBP13.59□□□□□ -0.23
USP1-201ENST00000339950 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.59□□□□□ -0.23
USP1-201ENST00000339950 CENPHQ9H3R5 247 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 ATG3Q9NT62 314 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 OGFRQ9NZT2 677 aa13.59□□□□□ -0.23
USP1-201ENST00000339950 MPHOSPH10O00566 681 aaKnown RBP13.58□□□□□ -0.23
USP1-201ENST00000339950 KIF5CO60282 957 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 ZMYND10O75800 440 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 USPL1Q5W0Q7 1092 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 WWC2Q6AWC2 1192 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 KRBA2Q6ZNG9 492 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 BRINP3Q76B58 766 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 NEK11Q8NG66 645 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 TIGD1Q96MW7 591 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 KRT23Q9C075 422 aa13.58□□□□□ -0.23
USP1-201ENST00000339950 SOWAHDA6NJG2 315 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 DNAJC21Q5F1R6 531 aaKnown RBP13.58□□□□□ -0.24
USP1-201ENST00000339950 AXDND1Q5T1B0 1012 aaPredicted RBP13.58□□□□□ -0.24
USP1-201ENST00000339950 FANCBQ8NB91 859 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 MAGEC2Q9UBF1 373 aaPredicted RBP13.58□□□□□ -0.24
USP1-201ENST00000339950 HPS5Q9UPZ3 1129 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 TECPR2O15040 1411 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 NPHP4O75161 1426 aaPredicted RBP13.58□□□□□ -0.24
USP1-201ENST00000339950 TEX33O43247 280 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 CHRNDQ07001 517 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 AMOTL1Q8IY63 956 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 TRIM47Q96LD4 638 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 SRRTQ9BXP5 876 aaKnown RBP13.58□□□□□ -0.24
USP1-201ENST00000339950 DEF6Q9H4E7 631 aa13.58□□□□□ -0.24
USP1-201ENST00000339950 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.58□□□□□ -0.24
USP1-201ENST00000339950 KCNQ2O43526 872 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 EVX2Q03828 476 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 STRBPQ96SI9 672 aaKnown RBP13.57□□□□□ -0.24
USP1-201ENST00000339950 GTPBP4Q9BZE4 634 aaKnown RBP13.57□□□□□ -0.24
USP1-201ENST00000339950 MAP3K15Q6ZN16 1313 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 SH2B2O14492 632 aaPredicted RBP13.57□□□□□ -0.24
USP1-201ENST00000339950 ENC1O14682 589 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 PPARAQ07869 468 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 E4F1Q66K89 784 aaPredicted RBP13.57□□□□□ -0.24
USP1-201ENST00000339950 CDK5RAP3Q96JB5 506 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 DIP2BQ9P265 1576 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 SOS2Q07890 1332 aaPredicted RBP13.57□□□□□ -0.24
USP1-201ENST00000339950 RNF41Q9H4P4 317 aaPredicted RBP13.57□□□□□ -0.24
USP1-201ENST00000339950 DACH1Q9UI36 760 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 TFR2Q9UP52 801 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 ADGRL3Q9HAR2 1447 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 ZMYM6O95789 1325 aa13.57□□□□□ -0.24
USP1-201ENST00000339950 ANKRD65E5RJM6 399 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 C6orf229H3BNL8 230 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 UBXN1Q04323 297 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 DMTNQ08495 405 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 LETM2Q2VYF4 491 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 ZNF444Q8N0Y2 327 aaPredicted RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 DYNLL2Q96FJ2 89 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 ERO1AQ96HE7 468 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 KAT14Q9H8E8 782 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.56□□□□□ -0.248e-11■■□□□ 13.4
USP1-201ENST00000339950 PEAK1Q9H792 1746 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 RIMBP2O15034 1052 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 ZSCAN20P17040 1043 aaPredicted RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 STAT6P42226 847 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 CCZ1BP86790 482 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 CCZ1P86791 482 aaPredicted RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 FAM98CQ17RN3 349 aaKnown RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 TOGARAM2Q6ZUX3 1019 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms