RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 THSD7BQ9C0I4 1608 aa19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 POLR3DP05423 398 aaPredicted RBP19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 SDSP20132 328 aa19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 MAP3K10Q02779 954 aa19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 MKRN3Q13064 507 aaKnown RBP19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 NMIQ13287 307 aaPredicted RBP19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 TICAM2Q86XR7 235 aa19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 DDRGK1Q96HY6 314 aa19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 FAM227BQ96M60 508 aa19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 ZNF112Q9UJU3 913 aa19.08■□□□□ 0.64
CCDC28A-201ENST00000332797 A0A0D9SFI3 127 aa19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 TBC1D12O60347 775 aa19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 GNAT2P19087 354 aa19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 NOGQ13253 232 aa19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 CCDC129Q6ZRS4 1044 aa19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 TTC6Q86TZ1 520 aa19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 HELLSQ9NRZ9 838 aa19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 DIAPH3Q9NSV4 1193 aa19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 HERC5Q9UII4 1024 aaKnown RBP19.07■□□□□ 0.64
CCDC28A-201ENST00000332797 PHF20L1A8MW92 1017 aa19.06■□□□□ 0.64
CCDC28A-201ENST00000332797 SNCAIPQ9Y6H5 919 aa19.06■□□□□ 0.64
CCDC28A-201ENST00000332797 BAZ2AQ9UIF9 1905 aaKnown RBP19.06■□□□□ 0.64
CCDC28A-201ENST00000332797 GSG1L2A8MUP6 293 aa19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 APPP05067 770 aa19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 CYP2D6P10635 497 aa19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 PLCD1P51178 756 aa19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 FOXP4Q8IVH2 680 aaPredicted RBP19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 AMOTL1Q8IY63 956 aa19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 WNK4Q96J92 1243 aa19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 ZIC5Q96T25 663 aa19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 DNAJC18Q9H819 358 aa19.05■□□□□ 0.64
CCDC28A-201ENST00000332797 HIP1O00291 1037 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 MAP2K2P36507 400 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 EVX2Q03828 476 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 MCMDC2Q4G0Z9 681 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 SPRYD7Q5W111 196 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 METTL16Q86W50 562 aaKnown RBP19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 JMYQ8N9B5 988 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 CNKSR2Q8WXI2 1034 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 OPTNQ96CV9 577 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 EHD4Q9H223 541 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 SERPINB13Q9UIV8 391 aa19.04■□□□□ 0.64
CCDC28A-201ENST00000332797 CYP2D7A0A087X1C5 515 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 USP17L12C9JPN9 530 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 USP17L21D6R901 530 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 KIF23Q02241 960 aaPredicted RBP19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 NOL9Q5SY16 702 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 CWC27Q6UX04 472 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 OTUD5Q96G74 571 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 EPB41L4AQ9HCS5 686 aaPredicted RBP19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 DOCK1Q14185 1865 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 SPDYE5A6NIY4 337 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 PATL2C9JE40 543 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 CTNND1O60716 968 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 ZBTB48P10074 688 aaPredicted RBP19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 GJA5P36382 358 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 TDO2P48775 406 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 GIMAP6Q6P9H5 292 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 CTR9Q6PD62 1173 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 SCYL3Q8IZE3 742 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 NACAP1Q9BZK3 213 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 PICK1Q9NRD5 415 aa19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 ARPP21Q9UBL0 812 aaPredicted RBP19.03■□□□□ 0.64
CCDC28A-201ENST00000332797 RRP1BQ14684 758 aaKnown RBP19.02■□□□□ 0.63
CCDC28A-201ENST00000332797 C12orf60Q5U649 245 aa19.02■□□□□ 0.63
CCDC28A-201ENST00000332797 ZNF589Q86UQ0 364 aaPredicted RBP19.02■□□□□ 0.63
CCDC28A-201ENST00000332797 ERO1BQ86YB8 467 aa19.02■□□□□ 0.63
CCDC28A-201ENST00000332797 CCDC171Q6TFL3 1326 aa19.01■□□□□ 0.63
CCDC28A-201ENST00000332797 ATAD5Q96QE3 1844 aa19.01■□□□□ 0.63
CCDC28A-201ENST00000332797 VPS53Q5VIR6 699 aa19.01■□□□□ 0.63
CCDC28A-201ENST00000332797 IFNL3Q8IZI9 196 aa19.01■□□□□ 0.63
CCDC28A-201ENST00000332797 DYNLL2Q96FJ2 89 aa19.01■□□□□ 0.63
CCDC28A-201ENST00000332797 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.01■□□□□ 0.63
CCDC28A-201ENST00000332797 LAMB1P07942 1786 aa19.01■□□□□ 0.63
CCDC28A-201ENST00000332797 SMIM22K7EJ46 135 aa19■□□□□ 0.63
CCDC28A-201ENST00000332797 GDF11O95390 407 aa19■□□□□ 0.63
CCDC28A-201ENST00000332797 CAP2P40123 477 aa19■□□□□ 0.63
CCDC28A-201ENST00000332797 MFAP1P55081 439 aaKnown RBP19■□□□□ 0.63
CCDC28A-201ENST00000332797 GABPAQ06546 454 aa19■□□□□ 0.63
CCDC28A-201ENST00000332797 NAPBQ9H115 298 aa19■□□□□ 0.63
CCDC28A-201ENST00000332797 MINDY4BA8MYZ0 360 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 FOXP2O15409 715 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 SHMT1P34896 483 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 MAP2K1Q02750 393 aaPredicted RBP18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 PPATQ06203 517 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 PPIL2Q13356 520 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 SBK1Q52WX2 424 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 TATDN1Q6P1N9 297 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 SLC44A5Q8NCS7 719 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 PCNTO95613 3336 aa18.99■□□□□ 0.63
CCDC28A-201ENST00000332797 MANSC4A6NHS7 340 aaPredicted RBP18.98■□□□□ 0.63
CCDC28A-201ENST00000332797 PTPRAP18433 802 aa18.98■□□□□ 0.63
CCDC28A-201ENST00000332797 CHMLP26374 656 aa18.98■□□□□ 0.63
CCDC28A-201ENST00000332797 SHROOM1Q2M3G4 852 aaPredicted RBP18.98■□□□□ 0.63
CCDC28A-201ENST00000332797 BMP2KLQ5H9B9 411 aa18.98■□□□□ 0.63
CCDC28A-201ENST00000332797 CCDC84Q86UT8 332 aaPredicted RBP18.98■□□□□ 0.63
CCDC28A-201ENST00000332797 SWAP70Q9UH65 585 aa18.98■□□□□ 0.63
CCDC28A-201ENST00000332797 IRF6O14896 467 aa18.97■□□□□ 0.63
CCDC28A-201ENST00000332797 HSPD1P10809 573 aaKnown RBP18.97■□□□□ 0.63
CCDC28A-201ENST00000332797 SREBF2Q12772 1141 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms