RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 LRRC37A3O60309 1634 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 POLR2DO15514 142 aaKnown RBP15.32■□□□□ 0.04
SKA3-201ENST00000298260 PRC1O43663 620 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 CCT6AP40227 531 aaKnown RBP15.32■□□□□ 0.04
SKA3-201ENST00000298260 NR1I3Q14994 352 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 KBTBD3Q8NAB2 608 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 LRRC59Q96AG4 307 aaKnown RBP15.32■□□□□ 0.04
SKA3-201ENST00000298260 MYD88Q99836 296 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 MYL10Q9BUA6 226 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 SENP2Q9HC62 589 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 GUCA1BQ9UMX6 200 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 CEP83Q9Y592 693 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 PLEKHG3A1L390 1219 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 CPP00450 1065 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 ATP2B2Q01814 1243 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 PTPN12Q05209 780 aaKnown RBP15.32■□□□□ 0.04
SKA3-201ENST00000298260 MMS19Q96T76 1030 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 HAUS7Q99871 368 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 MAST3O60307 1309 aa15.32■□□□□ 0.04
SKA3-201ENST00000298260 GSCP56915 257 aaPredicted RBP15.31■□□□□ 0.04
SKA3-201ENST00000298260 BRAPQ7Z569 592 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 BCAS4Q8TDM0 211 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 NAPGQ99747 312 aaPredicted RBP15.31■□□□□ 0.04
SKA3-201ENST00000298260 ATP5J2-PTCD1G3V325 749 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 PTCD1O75127 700 aaKnown RBP15.31■□□□□ 0.04
SKA3-201ENST00000298260 IRAK1P51617 712 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 RESP18Q5W5W9 173 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 KRT40Q6A162 431 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 UBE3BQ7Z3V4 1068 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 PPFIBP1Q86W92 1011 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 ALG1Q9BT22 464 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 NBPF3Q9H094 633 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 MED4Q9NPJ6 270 aa15.31■□□□□ 0.04
SKA3-201ENST00000298260 ZC3H4Q9UPT8 1303 aaKnown RBP15.31■□□□□ 0.04
SKA3-201ENST00000298260 NCAPD2Q15021 1401 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 AGPSO00116 658 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 ANTXR2P58335 489 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 ERVK-24P63145 666 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 POTEB2H3BUK9 544 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 MDM2Q00987 491 aaPredicted RBP15.3■□□□□ 0.04
SKA3-201ENST00000298260 SLC39A6Q13433 755 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 SWT1Q5T5J6 900 aaKnown RBP15.3■□□□□ 0.04
SKA3-201ENST00000298260 ZNF530Q6P9A1 599 aaPredicted RBP15.3■□□□□ 0.04
SKA3-201ENST00000298260 CPLX2Q6PUV4 134 aaKnown RBP15.3■□□□□ 0.04
SKA3-201ENST00000298260 ARHGEF25Q86VW2 580 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 CD248Q9HCU0 757 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 PAG1Q9NWQ8 432 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 MYO6Q9UM54 1294 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 ZNF142P52746 1687 aaPredicted RBP15.3■□□□□ 0.04
SKA3-201ENST00000298260 TMEM94Q12767 1356 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 STIM1Q13586 685 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 POSTNQ15063 836 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 STAMQ92783 540 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 OSBP2Q969R2 916 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 MAP3K14Q99558 947 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 HOOK1Q9UJC3 728 aaKnown RBP15.3■□□□□ 0.04
SKA3-201ENST00000298260 CAPN7Q9Y6W3 813 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 FMN2Q9NZ56 1722 aa15.3■□□□□ 0.04
SKA3-201ENST00000298260 ZNF185O15231 689 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 GYPCP04921 128 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 CD44P16070 742 aaKnown RBP15.29■□□□□ 0.04
SKA3-201ENST00000298260 SCP2P22307 547 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 ARHGAP25P42331 645 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 AFMP43652 599 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 EIF5P55010 431 aaKnown RBP15.29■□□□□ 0.04
SKA3-201ENST00000298260 CCDC82Q8N4S0 544 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 MYH8P13535 1937 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 EBAG9O00559 213 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 APTXQ7Z2E3 356 aaKnown RBP15.29■□□□□ 0.04
SKA3-201ENST00000298260 RRP36Q96EU6 259 aaKnown RBP15.29■□□□□ 0.04
SKA3-201ENST00000298260 CEP89Q96ST8 783 aa15.29■□□□□ 0.04
SKA3-201ENST00000298260 TDO2P48775 406 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 TTC39AQ5SRH9 613 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 RASGRP2Q7LDG7 609 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 MICU3Q86XE3 530 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 CHP1Q99653 195 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 NALCNQ8IZF0 1738 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 CEMIPQ8WUJ3 1361 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 A0A1B0GTH6 734 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 NEURL1BA8MQ27 555 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 FOXP2O15409 715 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 MFAP3LO75121 409 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 ATP1A1P05023 1023 aaKnown RBP15.28■□□□□ 0.04
SKA3-201ENST00000298260 ATP6V1AP38606 617 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 RFX5P48382 616 aaPredicted RBP15.28■□□□□ 0.04
SKA3-201ENST00000298260 GNGT1P63211 74 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 FKBP4Q02790 459 aaKnown RBP eCLIP15.28■□□□□ 0.04
SKA3-201ENST00000298260 GCKRQ14397 625 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 CCDC148Q8NFR7 591 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 CABLES1Q8TDN4 633 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 INCENPQ9NQS7 918 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 KCNG1Q9UIX4 513 aa15.28■□□□□ 0.04
SKA3-201ENST00000298260 GOLGA6CA6NDK9 693 aa15.27■□□□□ 0.04
SKA3-201ENST00000298260 GOLGA6DP0CG33 693 aa15.27■□□□□ 0.04
SKA3-201ENST00000298260 WASHC4Q2M389 1173 aa15.27■□□□□ 0.04
SKA3-201ENST00000298260 NUTM2AQ8IVF1 878 aaPredicted RBP15.27■□□□□ 0.04
SKA3-201ENST00000298260 PANX2Q96RD6 677 aa15.27■□□□□ 0.04
SKA3-201ENST00000298260 DSCC1Q9BVC3 393 aa15.27■□□□□ 0.04
SKA3-201ENST00000298260 GOLGA6AQ9NYA3 693 aa15.27■□□□□ 0.04
SKA3-201ENST00000298260 INPP5BP32019 993 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms