RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 GOLGA8AA7E2F4 631 aa11.67□□□□□ -0.54
LMX1A-201ENST00000294816 PES1O00541 588 aaKnown RBP11.67□□□□□ -0.54
LMX1A-201ENST00000294816 CEBPAP49715 358 aaPredicted RBP11.67□□□□□ -0.54
LMX1A-201ENST00000294816 SMYD4Q8IYR2 804 aaPredicted RBP11.67□□□□□ -0.54
LMX1A-201ENST00000294816 MSANTD4Q8NCY6 345 aa11.67□□□□□ -0.54
LMX1A-201ENST00000294816 CCDC148Q8NFR7 591 aa11.67□□□□□ -0.54
LMX1A-201ENST00000294816 SLF1Q9BQI6 1058 aa11.67□□□□□ -0.54
LMX1A-201ENST00000294816 RAB21Q9UL25 225 aa11.67□□□□□ -0.54
LMX1A-201ENST00000294816 GUCA1BQ9UMX6 200 aa11.67□□□□□ -0.54
LMX1A-201ENST00000294816 LIG3P49916 1009 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 SAFBQ15424 915 aaKnown RBP eCLIP11.66□□□□□ -0.54
LMX1A-201ENST00000294816 SENP2Q9HC62 589 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 KCNJ14Q9UNX9 436 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 PIK3C2AO00443 1686 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 BTBD18B2RXH4 712 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 ENC1O14682 589 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 CORO7P57737 925 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 PIP4K2BP78356 416 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 NR1I3Q14994 352 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 DNAJC21Q5F1R6 531 aaKnown RBP11.66□□□□□ -0.54
LMX1A-201ENST00000294816 TTC5Q8N0Z6 440 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 ZNF496Q96IT1 587 aaPredicted RBP11.66□□□□□ -0.54
LMX1A-201ENST00000294816 PANX2Q96RD6 677 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 NUP88Q99567 741 aaPredicted RBP11.66□□□□□ -0.54
LMX1A-201ENST00000294816 PXDNQ92626 1479 aa11.66□□□□□ -0.54
LMX1A-201ENST00000294816 B4E1Z4 1266 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 ZNF18P17022 549 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 USP5P45974 858 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 PI16Q6UXB8 463 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 GSPT2Q8IYD1 628 aaKnown RBP11.65□□□□□ -0.54
LMX1A-201ENST00000294816 MAP3K14Q99558 947 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 PUS3Q9BZE2 481 aaKnown RBP11.65□□□□□ -0.54
LMX1A-201ENST00000294816 PUS7LQ9H0K6 701 aaKnown RBP11.65□□□□□ -0.54
LMX1A-201ENST00000294816 ANGEL1Q9UNK9 670 aaKnown RBP11.65□□□□□ -0.54
LMX1A-201ENST00000294816 ZBTB43O43298 467 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 CDC25AP30304 524 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 ARHGEF25Q86VW2 580 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 CRACR2AQ9BSW2 395 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 CEP126Q9P2H0 1117 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 PHF8Q9UPP1 1060 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 LAMA4Q16363 1823 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 TOPAZ1Q8N9V7 1692 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 ZMYM6O95789 1325 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 PPFIA4O75335 1185 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 GUCY2CP25092 1073 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 ADORA1P30542 326 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 USP49Q70CQ1 688 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 ATG9AQ7Z3C6 839 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 CAGE1Q8TC20 777 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 STAMQ92783 540 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 MED4Q9NPJ6 270 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 MYO6Q9UM54 1294 aa11.65□□□□□ -0.54
LMX1A-201ENST00000294816 SYNRGQ9UMZ2 1314 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 GPAA1O43292 621 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 MFAP3LO75121 409 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 CCT5P48643 541 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 FXR1P51114 621 aaKnown RBP eCLIP11.64□□□□□ -0.55
LMX1A-201ENST00000294816 PLCD1P51178 756 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 WHAMMP3Q1A5X7 153 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 VPS16Q9H269 839 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 ZNF330Q9Y3S2 320 aaPredicted RBP11.64□□□□□ -0.55
LMX1A-201ENST00000294816 N4BP3O15049 544 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 IL15P40933 162 aaPredicted RBP11.64□□□□□ -0.55
LMX1A-201ENST00000294816 RABL6Q3YEC7 729 aaPredicted RBP11.64□□□□□ -0.55
LMX1A-201ENST00000294816 MED15Q96RN5 788 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 SEC31BQ9NQW1 1179 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 HDAC6Q9UBN7 1215 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 TTF2Q9UNY4 1162 aaKnown RBP11.64□□□□□ -0.55
LMX1A-201ENST00000294816 SLIT1O75093 1534 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 A0A1B0GTH6 734 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 SSRP1Q08945 709 aaKnown RBP11.64□□□□□ -0.55
LMX1A-201ENST00000294816 MORC3Q14149 939 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 TMEM67Q5HYA8 995 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 CYB5R4Q7L1T6 521 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 DIS3L2Q8IYB7 885 aaKnown RBP11.64□□□□□ -0.55
LMX1A-201ENST00000294816 CMTR1Q8N1G2 835 aaKnown RBP11.64□□□□□ -0.55
LMX1A-201ENST00000294816 INCENPQ9NQS7 918 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 TRIM10Q9UDY6 481 aa11.64□□□□□ -0.55
LMX1A-201ENST00000294816 SRGAP2O75044 1071 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 ZAP70P43403 619 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 MNAT1P51948 309 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 STIM1Q13586 685 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 ESCO1Q5FWF5 840 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 RRP12Q5JTH9 1297 aaKnown RBP11.63□□□□□ -0.55
LMX1A-201ENST00000294816 TTC19Q6DKK2 380 aaPredicted RBP11.63□□□□□ -0.55
LMX1A-201ENST00000294816 APOA5Q6Q788 366 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 TADA2BQ86TJ2 420 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 NAA15Q9BXJ9 866 aaKnown RBP11.63□□□□□ -0.55
LMX1A-201ENST00000294816 RGPD8O14715 1765 aaPredicted RBP11.63□□□□□ -0.55
LMX1A-201ENST00000294816 KCNA6P17658 529 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 MDM2Q00987 491 aaPredicted RBP11.63□□□□□ -0.55
LMX1A-201ENST00000294816 CNGA4Q8IV77 575 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 EFCAB13Q8IY85 973 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 NKX2-3Q8TAU0 364 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 MYCBPQ99417 103 aaPredicted RBP11.63□□□□□ -0.55
LMX1A-201ENST00000294816 BRMS1Q9HCU9 246 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 WWC3Q9ULE0 1092 aa11.63□□□□□ -0.55
LMX1A-201ENST00000294816 EYA2O00167 538 aa11.62□□□□□ -0.55
LMX1A-201ENST00000294816 SCARF1Q14162 830 aa11.62□□□□□ -0.55
LMX1A-201ENST00000294816 RASGRP2Q7LDG7 609 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms