RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SAMSN1Q9NSI8 373 aaKnown RBP24.49■■□□□ 1.51
TRIM28-201ENST00000253024 URI1O94763 535 aaPredicted RBP24.49■■□□□ 1.51
TRIM28-201ENST00000253024 C3orf67Q6ZVT6 689 aa24.49■■□□□ 1.51
TRIM28-201ENST00000253024 EPSTI1Q96J88 318 aa24.49■■□□□ 1.51
TRIM28-201ENST00000253024 UQCRFS1P1P0C7P4 283 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 TRIM22Q8IYM9 498 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 KRI1Q8N9T8 703 aaKnown RBP24.48■■□□□ 1.51
TRIM28-201ENST00000253024 TMEM87BQ96K49 555 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 ZSWIM4Q9H7M6 989 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 NEMFO60524 1076 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 ARID4AP29374 1257 aaPredicted RBP24.48■■□□□ 1.51
TRIM28-201ENST00000253024 CHRNDQ07001 517 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 NFE2L3Q9Y4A8 694 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 LAMB4A4D0S4 1761 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 NUTM2BA6NNL0 878 aaPredicted RBP24.48■■□□□ 1.51
TRIM28-201ENST00000253024 NUTM2EB1AL46 878 aaPredicted RBP24.48■■□□□ 1.51
TRIM28-201ENST00000253024 RESP18Q5W5W9 173 aa24.48■■□□□ 1.51
TRIM28-201ENST00000253024 NUTM2AQ8IVF1 878 aaPredicted RBP24.48■■□□□ 1.51
TRIM28-201ENST00000253024 TNS2Q63HR2 1409 aa24.47■■□□□ 1.51
TRIM28-201ENST00000253024 SMAP1Q8IYB5 467 aaPredicted RBP24.47■■□□□ 1.51
TRIM28-201ENST00000253024 FBXL16Q8N461 479 aa24.47■■□□□ 1.51
TRIM28-201ENST00000253024 SRCAPQ6ZRS2 3230 aa24.47■■□□□ 1.51
TRIM28-201ENST00000253024 PLEKHA8P1O95397 391 aa24.47■■□□□ 1.51
TRIM28-201ENST00000253024 IGHMBP2P38935 993 aaKnown RBP24.47■■□□□ 1.51
TRIM28-201ENST00000253024 CRKLP46109 303 aaKnown RBP24.47■■□□□ 1.51
TRIM28-201ENST00000253024 OSBPL5Q9H0X9 879 aaPredicted RBP24.47■■□□□ 1.51
TRIM28-201ENST00000253024 CSRNP2Q9H175 543 aa24.47■■□□□ 1.51
TRIM28-201ENST00000253024 FBXO3Q9UK99 471 aa24.47■■□□□ 1.51
TRIM28-201ENST00000253024 KARSQ15046 597 aaKnown RBP24.46■■□□□ 1.51
TRIM28-201ENST00000253024 ZNF654Q8IZM8 581 aa24.46■■□□□ 1.51
TRIM28-201ENST00000253024 INTS13Q9NVM9 706 aa24.46■■□□□ 1.51
TRIM28-201ENST00000253024 HPSEQ9Y251 543 aa24.46■■□□□ 1.51
TRIM28-201ENST00000253024 V9GY48 417 aaPredicted RBP24.46■■□□□ 1.51
TRIM28-201ENST00000253024 CDHR2Q9BYE9 1310 aa24.46■■□□□ 1.51
TRIM28-201ENST00000253024 CDC25AP30304 524 aa24.46■■□□□ 1.51
TRIM28-201ENST00000253024 ZNF174Q15697 407 aa24.46■■□□□ 1.51
TRIM28-201ENST00000253024 FANCGO15287 622 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 KCNQ2O43526 872 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 MMP1P03956 469 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 FGFR2P21802 821 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 KLRK1P26718 216 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 GTF2E1P29083 439 aaPredicted RBP24.45■■□□□ 1.51
TRIM28-201ENST00000253024 FAM47AQ5JRC9 791 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 SHISA4Q96DD7 197 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 NACAP1Q9BZK3 213 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 MAN1B1Q9UKM7 699 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 LMTK3Q96Q04 1460 aa24.45■■□□□ 1.51
TRIM28-201ENST00000253024 TNKSO95271 1327 aa24.45■■□□□ 1.5
TRIM28-201ENST00000253024 SLU7O95391 586 aaKnown RBP24.45■■□□□ 1.5
TRIM28-201ENST00000253024 VEGFAP15692 232 aaPredicted RBP24.45■■□□□ 1.5
TRIM28-201ENST00000253024 IRX2Q9BZI1 471 aaPredicted RBP24.45■■□□□ 1.5
TRIM28-201ENST00000253024 MYH15Q9Y2K3 1946 aa24.45■■□□□ 1.5
TRIM28-201ENST00000253024 FMNL1O95466 1100 aaPredicted RBP24.45■■□□□ 1.5
TRIM28-201ENST00000253024 PPARAQ07869 468 aa24.45■■□□□ 1.5
TRIM28-201ENST00000253024 MTF1Q14872 753 aa24.45■■□□□ 1.5
TRIM28-201ENST00000253024 SART3Q15020 963 aaKnown RBP24.45■■□□□ 1.5
TRIM28-201ENST00000253024 TFCP2L1Q9NZI6 479 aa24.45■■□□□ 1.5
TRIM28-201ENST00000253024 MAPK8IP1Q9UQF2 711 aa24.45■■□□□ 1.5
TRIM28-201ENST00000253024 A0A0U1RQJ8 604 aa24.44■■□□□ 1.5
TRIM28-201ENST00000253024 POSTNQ15063 836 aa24.44■■□□□ 1.5
TRIM28-201ENST00000253024 FANCBQ8NB91 859 aa24.44■■□□□ 1.5
TRIM28-201ENST00000253024 ATRIPQ8WXE1 791 aa24.44■■□□□ 1.5
TRIM28-201ENST00000253024 AKAP11Q9UKA4 1901 aa24.44■■□□□ 1.5
TRIM28-201ENST00000253024 AKAP17AQ02040 695 aaKnown RBP24.44■■□□□ 1.5
TRIM28-201ENST00000253024 CCDC150Q8NCX0 1101 aa24.44■■□□□ 1.5
TRIM28-201ENST00000253024 ABCC6O95255 1503 aa24.44■■□□□ 1.5
TRIM28-201ENST00000253024 ZNF34Q8IZ26 560 aa24.43■■□□□ 1.5
TRIM28-201ENST00000253024 PPP6R2O75170 966 aa24.43■■□□□ 1.5
TRIM28-201ENST00000253024 ZNF771Q7L3S4 317 aaPredicted RBP24.43■■□□□ 1.5
TRIM28-201ENST00000253024 BLZF1Q9H2G9 400 aa24.43■■□□□ 1.5
TRIM28-201ENST00000253024 TUBE1Q9UJT0 475 aa24.43■■□□□ 1.5
TRIM28-201ENST00000253024 A0A087X0B3 334 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 ADAMTS3O15072 1205 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 CUTAO60888 179 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 ITPK1Q13572 414 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 KLHL34Q8N239 644 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 EEF2KMTQ96G04 330 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 MROH5Q6ZUA9 1318 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 SGMS1Q86VZ5 419 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 CRACR2BQ8N4Y2 399 aaPredicted RBP24.42■■□□□ 1.5
TRIM28-201ENST00000253024 NRDCO43847 1150 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 IFNAR1P17181 557 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 TOGARAM2Q6ZUX3 1019 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 SMARCE1Q969G3 411 aa24.42■■□□□ 1.5
TRIM28-201ENST00000253024 CGNQ9P2M7 1197 aaKnown RBP24.42■■□□□ 1.5
TRIM28-201ENST00000253024 ARHGAP29Q52LW3 1261 aa24.41■■□□□ 1.5
TRIM28-201ENST00000253024 KRT23Q9C075 422 aa24.41■■□□□ 1.5
TRIM28-201ENST00000253024 FBXO2Q9UK22 296 aaPredicted RBP24.41■■□□□ 1.5
TRIM28-201ENST00000253024 CARD6Q9BX69 1037 aa24.41■■□□□ 1.5
TRIM28-201ENST00000253024 IMPACTQ9P2X3 320 aa24.41■■□□□ 1.5
TRIM28-201ENST00000253024 TOGARAM1Q9Y4F4 1720 aa24.4■■□□□ 1.5
TRIM28-201ENST00000253024 TEX33O43247 280 aa24.4■■□□□ 1.5
TRIM28-201ENST00000253024 INTS5Q6P9B9 1019 aaKnown RBP24.4■■□□□ 1.5
TRIM28-201ENST00000253024 MED15Q96RN5 788 aa24.4■■□□□ 1.5
TRIM28-201ENST00000253024 MAGEB6P1A0A0J9YX57 407 aa24.4■■□□□ 1.5
TRIM28-201ENST00000253024 VWA3AA6NCI4 1184 aa24.4■■□□□ 1.5
TRIM28-201ENST00000253024 CYP2D6P10635 497 aa24.4■■□□□ 1.5
TRIM28-201ENST00000253024 PLIN2Q99541 437 aa24.4■■□□□ 1.5
TRIM28-201ENST00000253024 IL6STP40189 918 aaPredicted RBP24.39■■□□□ 1.5
TRIM28-201ENST00000253024 LIFRP42702 1097 aa24.39■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms