RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 ZBED3Q96IU2 234 aaPredicted RBP10.22□□□□□ -0.77
VPS4B-201ENST00000238497 HHIPL1Q96JK4 782 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 LIMCH1Q9UPQ0 1083 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 SLC10A3P09131 477 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 SKOR2Q2VWA4 1001 aaPredicted RBP10.22□□□□□ -0.77
VPS4B-201ENST00000238497 RNF20Q5VTR2 975 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 ELP3Q9H9T3 547 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 ZDHHC9Q9Y397 364 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 IDH1O75874 414 aaKnown RBP10.21□□□□□ -0.77
VPS4B-201ENST00000238497 ECM2O94769 699 aaPredicted RBP10.21□□□□□ -0.77
VPS4B-201ENST00000238497 GJB2P29033 226 aa10.21□□□□□ -0.77
VPS4B-201ENST00000238497 SPTY2D1Q68D10 685 aaPredicted RBP10.21□□□□□ -0.77
VPS4B-201ENST00000238497 RUFY3Q7L099 469 aa10.21□□□□□ -0.77
VPS4B-201ENST00000238497 CSRNP1Q96S65 589 aa10.21□□□□□ -0.77
VPS4B-201ENST00000238497 TOMM22Q9NS69 142 aa10.21□□□□□ -0.77
VPS4B-201ENST00000238497 TFIP11Q9UBB9 837 aaKnown RBP10.21□□□□□ -0.77
VPS4B-201ENST00000238497 DAGLAQ9Y4D2 1042 aa10.21□□□□□ -0.77
VPS4B-201ENST00000238497 CSADQ9Y600 493 aa10.21□□□□□ -0.77
VPS4B-201ENST00000238497 TRPM7Q96QT4 1865 aa10.21□□□□□ -0.77
VPS4B-201ENST00000238497 CCDC171Q6TFL3 1326 aa10.21□□□□□ -0.78
VPS4B-201ENST00000238497 MCM2P49736 904 aa10.21□□□□□ -0.78
VPS4B-201ENST00000238497 CCT2P78371 535 aaKnown RBP10.21□□□□□ -0.78
VPS4B-201ENST00000238497 SPATA5Q8NB90 893 aa10.21□□□□□ -0.78
VPS4B-201ENST00000238497 NOL10Q9BSC4 688 aaKnown RBP10.21□□□□□ -0.78
VPS4B-201ENST00000238497 GUCY1B3Q02153 619 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 APOBEC3HQ6NTF7 200 aaKnown RBP10.2□□□□□ -0.78
VPS4B-201ENST00000238497 CHMP4CQ96CF2 233 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 ZDHHC15Q96MV8 337 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 HMG20BQ9P0W2 317 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 CNPY2Q9Y2B0 182 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 PPP2R3BQ9Y5P8 575 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 ZNF609O15014 1411 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 SEMA3EO15041 775 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 GADD45BO75293 160 aaPredicted RBP10.2□□□□□ -0.78
VPS4B-201ENST00000238497 HDLBPQ00341 1268 aaKnown RBP10.2□□□□□ -0.78
VPS4B-201ENST00000238497 IFFO2Q5TF58 517 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 VPS53Q5VIR6 699 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 LARP1BQ659C4 914 aaKnown RBP10.2□□□□□ -0.78
VPS4B-201ENST00000238497 SLF2Q8IX21 1173 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 SUGT1Q9Y2Z0 365 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 FAM155AB1AL88 458 aaPredicted RBP10.2□□□□□ -0.78
VPS4B-201ENST00000238497 CA12O43570 354 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 TBC1D8O95759 1140 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 UQCRFS1P1P0C7P4 283 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 NFIAQ12857 509 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 CDC42EP5Q6NZY7 148 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 WRNIP1Q96S55 665 aa10.2□□□□□ -0.78
VPS4B-201ENST00000238497 GOLGA6L4A6NEF3 574 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 SLC27A2O14975 620 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 HHIPL2Q6UWX4 724 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 ANKRD13AQ8IZ07 590 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 OTUD5Q96G74 571 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 RNF186Q9NXI6 227 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 BTDP43251 543 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 MRE11P49959 708 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 ANAPC15P60006 121 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 PRDM10Q9NQV6 1147 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 PAG1Q9NWQ8 432 aa10.19□□□□□ -0.78
VPS4B-201ENST00000238497 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.19□□□□□ -0.78
VPS4B-201ENST00000238497 USP2O75604 605 aaPredicted RBP10.18□□□□□ -0.78
VPS4B-201ENST00000238497 SYT1P21579 422 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 DDIT3P35638 169 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 NASPP49321 788 aaPredicted RBP10.18□□□□□ -0.78
VPS4B-201ENST00000238497 BRF1Q92994 677 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 LMBRD1Q9NUN5 540 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 CCDC85CA6NKD9 419 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 HIP1O00291 1037 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 MCAMP43121 646 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 MECOMQ03112 1051 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 ME3Q16798 604 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 SLC4A8Q2Y0W8 1093 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 DCAF15Q66K64 600 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 CNKSR2Q8WXI2 1034 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 ZKSCAN4Q969J2 545 aaPredicted RBP10.18□□□□□ -0.78
VPS4B-201ENST00000238497 H3BQV1 296 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 STX6O43752 255 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 LDHCP07864 332 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 PSMA5P28066 241 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 MAP3K9P80192 1104 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 SREBF2Q12772 1141 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 DGKZQ13574 1117 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 SPRYD7Q5W111 196 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 FAM184AQ8NB25 1140 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 CASP8AP2Q9UKL3 1982 aa10.18□□□□□ -0.78
VPS4B-201ENST00000238497 PTMAP06454 111 aaKnown RBP10.17□□□□□ -0.78
VPS4B-201ENST00000238497 ZAP70P43403 619 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 DNM1Q05193 864 aaKnown RBP10.17□□□□□ -0.78
VPS4B-201ENST00000238497 NAA16Q6N069 864 aaPredicted RBP10.17□□□□□ -0.78
VPS4B-201ENST00000238497 OPTNQ96CV9 577 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 TPCN1Q9ULQ1 816 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 COL1A1P02452 1464 aaPredicted RBP10.17□□□□□ -0.78
VPS4B-201ENST00000238497 ZSCAN23Q3MJ62 389 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 GPT2Q8TD30 523 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 GSTO1P78417 241 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 MCMDC2Q4G0Z9 681 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 LDLRAD1Q5T700 205 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 HOOK2Q96ED9 719 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 WNK4Q96J92 1243 aa10.17□□□□□ -0.78
VPS4B-201ENST00000238497 AATFQ9NY61 560 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS4B-201ENST00000238497 JAK2O60674 1132 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms