RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 THEMISQ8N1K5 641 aaPredicted RBP16.56■□□□□ 0.24
PTPRA-201ENST00000216877 NSUN7Q8NE18 718 aaKnown RBP16.56■□□□□ 0.24
PTPRA-201ENST00000216877 PSMB7Q99436 277 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 PCDHA5Q9Y5H7 936 aa16.56■□□□□ 0.24
PTPRA-201ENST00000216877 EME2A4GXA9 379 aaPredicted RBP16.55■□□□□ 0.24
PTPRA-201ENST00000216877 ARID4AP29374 1257 aaPredicted RBP16.55■□□□□ 0.24
PTPRA-201ENST00000216877 RBL2Q08999 1139 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 ZKSCAN8Q15776 578 aaPredicted RBP16.55■□□□□ 0.24
PTPRA-201ENST00000216877 WHAMMP3Q1A5X7 153 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 LINC00301Q8NCQ3 95 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 YIPF3Q9GZM5 350 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 XIRP1Q702N8 1843 aaKnown RBP16.55■□□□□ 0.24
PTPRA-201ENST00000216877 LRRC7Q96NW7 1537 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 E7EVH7 732 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 HIP1O00291 1037 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 CHGBP05060 677 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 ERCC3P19447 782 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 DNA2P51530 1060 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 AMOTL2Q9Y2J4 779 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 BACH1O14867 736 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 GUCY1A3Q02108 690 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 NAA16Q6N069 864 aaPredicted RBP16.55■□□□□ 0.24
PTPRA-201ENST00000216877 TMEM139Q8IV31 216 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 IL17RAQ96F46 866 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 SH3BP1Q9Y3L3 701 aa16.55■□□□□ 0.24
PTPRA-201ENST00000216877 ADAMTS13Q76LX8 1427 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 PARD3BQ8TEW8 1205 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 TEX33O43247 280 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 MYO1BO43795 1136 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 BUB1BO60566 1050 aaPredicted RBP16.54■□□□□ 0.24
PTPRA-201ENST00000216877 TUBBP07437 444 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 MCM3P25205 808 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 CCT6AP40227 531 aaKnown RBP16.54■□□□□ 0.24
PTPRA-201ENST00000216877 CCDC102BQ68D86 513 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 TBC1D22AQ8WUA7 517 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 SLC40A1Q9NP59 571 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 CRYMQ14894 314 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 PREPLQ4J6C6 727 aaPredicted RBP16.54■□□□□ 0.24
PTPRA-201ENST00000216877 TRIM10Q9UDY6 481 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 G3BP2Q9UN86 482 aaKnown RBP16.54■□□□□ 0.24
PTPRA-201ENST00000216877 CRYBG1Q9Y4K1 1723 aa16.54■□□□□ 0.24
PTPRA-201ENST00000216877 KIF3CO14782 793 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 HSF2BPO75031 334 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 PRPF6O94906 941 aaKnown RBP16.53■□□□□ 0.24
PTPRA-201ENST00000216877 RBM5P52756 815 aaKnown RBP eCLIP16.53■□□□□ 0.248e-6■■■■□ 20.7
PTPRA-201ENST00000216877 PNMA8AQ86V59 439 aaPredicted RBP16.53■□□□□ 0.24
PTPRA-201ENST00000216877 STAG1Q8WVM7 1258 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 PIK3R5Q8WYR1 880 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 TACO1Q9BSH4 297 aaKnown RBP16.53■□□□□ 0.24
PTPRA-201ENST00000216877 TFR2Q9UP52 801 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 CCDC61Q9Y6R9 512 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 FOXN1O15353 648 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 CASP14P31944 242 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 RBBP5Q15291 538 aaKnown RBP16.53■□□□□ 0.24
PTPRA-201ENST00000216877 FILIP1LQ4L180 1135 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 AIDAQ96BJ3 306 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 DDX20Q9UHI6 824 aaKnown RBP16.53■□□□□ 0.24
PTPRA-201ENST00000216877 OPA1O60313 960 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 SLC7A5Q01650 507 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 PDE4BQ07343 736 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 DIP2AQ14689 1571 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 ITSN1Q15811 1721 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 KIAA1328Q86T90 577 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 NUP133Q8WUM0 1156 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 MMS19Q96T76 1030 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 INTS13Q9NVM9 706 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 HAUS2Q9NVX0 235 aa16.53■□□□□ 0.24
PTPRA-201ENST00000216877 PROSER2Q86WR7 435 aaPredicted RBP16.52■□□□□ 0.24
PTPRA-201ENST00000216877 CCDC13Q8IYE1 715 aa16.52■□□□□ 0.24
PTPRA-201ENST00000216877 MYO1EQ12965 1108 aa16.52■□□□□ 0.23
PTPRA-201ENST00000216877 ODF2Q5BJF6 829 aa16.52■□□□□ 0.23
PTPRA-201ENST00000216877 BPIFA3Q9BQP9 254 aa16.52■□□□□ 0.23
PTPRA-201ENST00000216877 TSR1Q2NL82 804 aaKnown RBP16.52■□□□□ 0.23
PTPRA-201ENST00000216877 PARP9Q8IXQ6 854 aa16.52■□□□□ 0.23
PTPRA-201ENST00000216877 ARL8AQ96BM9 186 aa16.52■□□□□ 0.23
PTPRA-201ENST00000216877 PI4KAP2A4QPH2 592 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 MYBL2P10244 700 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 C2orf54Q08AI8 447 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 TBC1D8BQ0IIM8 1120 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 HSP90AB2PQ58FF8 381 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 ANO1Q5XXA6 986 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 PI4KAP1Q8N8J0 262 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 USP14P54578 494 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 TUBB4BP68371 445 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 GPIHBP1Q8IV16 184 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 SAAL1Q96ER3 474 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 RRP36Q96EU6 259 aaKnown RBP16.51■□□□□ 0.23
PTPRA-201ENST00000216877 SH3GL3Q99963 347 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 HMG20BQ9P0W2 317 aa16.51■□□□□ 0.23
PTPRA-201ENST00000216877 GRAMD1CQ8IYS0 662 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 TLR7Q9NYK1 1049 aaKnown RBP16.5■□□□□ 0.23
PTPRA-201ENST00000216877 RTEL1Q9NZ71 1219 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 C21orf2O43822 256 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 KCNB1Q14721 858 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 MSL1Q68DK7 614 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 FMN2Q9NZ56 1722 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 APBA1Q02410 837 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 MYSM1Q5VVJ2 828 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 MAATS1Q7Z4T9 603 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 KLHDC4Q8TBB5 520 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms