RNA–Protein interactions for RNA: ENST00000035307.6

CHPF2-201, Transcript of chondroitin polymerizing factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHPF2, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPF2-201ENST00000035307 KRT23Q9C075 422 aa13.82□□□□□ -0.2
CHPF2-201ENST00000035307 BSDC1Q9NW68 430 aaPredicted RBP13.82□□□□□ -0.2
CHPF2-201ENST00000035307 MAGEC2Q9UBF1 373 aaPredicted RBP13.82□□□□□ -0.2
CHPF2-201ENST00000035307 PATL2C9JE40 543 aaKnown RBP13.82□□□□□ -0.2
CHPF2-201ENST00000035307 GPSM2P81274 684 aa13.82□□□□□ -0.2
CHPF2-201ENST00000035307 SCRN1Q12765 414 aa13.82□□□□□ -0.2
CHPF2-201ENST00000035307 PPP4R3BQ5MIZ7 849 aa13.82□□□□□ -0.2
CHPF2-201ENST00000035307 USP40Q9NVE5 1235 aa13.82□□□□□ -0.2
CHPF2-201ENST00000035307 TCP10L2B9ZVM9 353 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 CSF1RP07333 972 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 UBASH3AP57075 661 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 TTLL12Q14166 644 aaPredicted RBP13.81□□□□□ -0.2
CHPF2-201ENST00000035307 R3HDM1Q15032 1099 aaKnown RBP13.81□□□□□ -0.2
CHPF2-201ENST00000035307 TEX35Q5T0J7 233 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 AKNAD1Q5T1N1 836 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 COL23A1Q86Y22 540 aaPredicted RBP13.81□□□□□ -0.2
CHPF2-201ENST00000035307 JDP2Q8WYK2 163 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 MAPK8IP1Q9UQF2 711 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 SRCAPQ6ZRS2 3230 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 CTAGE5O15320 804 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 EPS15P42566 896 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 GRM1Q13255 1194 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 GRAPQ13588 217 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 UVSSAQ2YD98 709 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 GRAPLQ8TC17 118 aaPredicted RBP13.81□□□□□ -0.2
CHPF2-201ENST00000035307 IDEP14735 1019 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 WDR66Q8TBY9 1149 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 TCEAL9Q9UHQ7 104 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 CCDC194A0A1B0GVG4 234 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 ERCC3P19447 782 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 WDR78Q5VTH9 848 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 LRP10Q7Z4F1 713 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 FNBP4Q8N3X1 1017 aaPredicted RBP13.81□□□□□ -0.2
CHPF2-201ENST00000035307 CABP5Q9NP86 173 aa13.81□□□□□ -0.2
CHPF2-201ENST00000035307 ARGLU1Q9NWB6 273 aaPredicted RBP13.81□□□□□ -0.2
CHPF2-201ENST00000035307 TBC1D10CQ8IV04 446 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 KIF18AQ8NI77 898 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 GTF3C6Q969F1 213 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 VPS54Q9P1Q0 977 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 XDHP47989 1333 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 UBXN4Q92575 508 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 DSCC1Q9BVC3 393 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 ZSWIM5Q9P217 1185 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 ZHX1Q9UKY1 873 aaPredicted RBP13.8□□□□□ -0.2
CHPF2-201ENST00000035307 GYS1P13807 737 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 ARHGAP29Q52LW3 1261 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 LRRC47Q8N1G4 583 aaKnown RBP13.8□□□□□ -0.2
CHPF2-201ENST00000035307 SMARCE1Q969G3 411 aa13.8□□□□□ -0.2
CHPF2-201ENST00000035307 ANKRD26Q9UPS8 1709 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 PDIA4P13667 645 aaKnown RBP13.79□□□□□ -0.2
CHPF2-201ENST00000035307 KCNG4Q8TDN1 519 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 STRBPQ96SI9 672 aaKnown RBP13.79□□□□□ -0.2
CHPF2-201ENST00000035307 MAP7D2Q96T17 732 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 GPR108Q9NPR9 543 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 HLA-DOAP06340 250 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 PDE6BP35913 854 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 GSTO1P78417 241 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 MAPK8IP2Q13387 824 aaPredicted RBP13.79□□□□□ -0.2
CHPF2-201ENST00000035307 UBA5Q9GZZ9 404 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 TNKSO95271 1327 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 ZNF609O15014 1411 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 CBFA2T2O43439 604 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 FAM193AP78312 1265 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 CLEC10AQ8IUN9 316 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 CCDC43Q96MW1 224 aaKnown RBP13.79□□□□□ -0.2
CHPF2-201ENST00000035307 SENP2Q9HC62 589 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 SEC63Q9UGP8 760 aaKnown RBP13.79□□□□□ -0.2
CHPF2-201ENST00000035307 NRBP1Q9UHY1 535 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 DNAI1Q9UI46 699 aa13.79□□□□□ -0.2
CHPF2-201ENST00000035307 USP17L3A6NCW0 530 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 USP17L4A6NCW7 530 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 CUL4AQ13619 759 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 AOC3Q16853 763 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 CEP135Q66GS9 1140 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 USP17L1Q7RTZ2 530 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 TRERF1Q96PN7 1200 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 PDGFDQ9GZP0 370 aaPredicted RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 ZNF277Q9NRM2 450 aaPredicted RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 ABCC12Q96J65 1359 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 CDHR2Q9BYE9 1310 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 SNW1Q13573 536 aaKnown RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 ZNF174Q15697 407 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 SLF2Q8IX21 1173 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 DEF6Q9H4E7 631 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 CNNM2Q9H8M5 875 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 FRMPD2Q68DX3 1309 aaPredicted RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 EPB41L2O43491 1005 aaKnown RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 PDIA3P30101 505 aaKnown RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 TNNT3P45378 269 aaPredicted RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 CHMP4BP1P59074 171 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 SH3RF3Q8TEJ3 882 aaPredicted RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 EYA3Q99504 573 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 RGPD5Q99666 1765 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 AK9Q5TCS8 1911 aa13.78□□□□□ -0.2
CHPF2-201ENST00000035307 USP42Q9H9J4 1324 aaKnown RBP13.78□□□□□ -0.2
CHPF2-201ENST00000035307 POLR3GO15318 223 aaPredicted RBP13.77□□□□□ -0.2
CHPF2-201ENST00000035307 ALDH1B1P30837 517 aa13.77□□□□□ -0.2
CHPF2-201ENST00000035307 MCM7P33993 719 aa13.77□□□□□ -0.2
CHPF2-201ENST00000035307 SPICE1Q8N0Z3 855 aa13.77□□□□□ -0.2
CHPF2-201ENST00000035307 DACH1Q9UI36 760 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms