RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 KRTAP19-2Q3LHN2 52 aa-1.04□□□□□ -2.58
VPS35-212ENST00000640313 S100ZQ8WXG8 99 aa-1.04□□□□□ -2.58
VPS35-212ENST00000640313 SMIM2Q9BVW6 85 aa-1.04□□□□□ -2.58
VPS35-212ENST00000640313 LMO7Q8WWI1 1683 aa-1.04□□□□□ -2.58
VPS35-212ENST00000640313 AGLP35573 1532 aa-1.05□□□□□ -2.58
VPS35-212ENST00000640313 SCRIBQ14160 1630 aa-1.05□□□□□ -2.58
VPS35-212ENST00000640313 ASPMQ8IZT6 3477 aa-1.05□□□□□ -2.58
VPS35-212ENST00000640313 XIRP2A4UGR9 3374 aa-1.06□□□□□ -2.58
VPS35-212ENST00000640313 CDH23Q9H251 3354 aa-1.08□□□□□ -2.58
VPS35-212ENST00000640313 UGGT1Q9NYU2 1555 aa-1.08□□□□□ -2.58
VPS35-212ENST00000640313 CPS1P31327 1500 aa-1.08□□□□□ -2.58
VPS35-212ENST00000640313 PLNP26678 52 aa-1.08□□□□□ -2.58
VPS35-212ENST00000640313 TTTY10Q9BZA0 68 aa-1.08□□□□□ -2.58
VPS35-212ENST00000640313 CCDC180Q9P1Z9 1646 aa-1.08□□□□□ -2.58
VPS35-212ENST00000640313 NRXN3Q9Y4C0 1643 aa-1.08□□□□□ -2.58
VPS35-212ENST00000640313 EFCAB5A4FU69 1503 aa-1.09□□□□□ -2.58
VPS35-212ENST00000640313 TRPM2O94759 1503 aa-1.09□□□□□ -2.58
VPS35-212ENST00000640313 BRCA2P51587 3418 aa-1.09□□□□□ -2.58
VPS35-212ENST00000640313 MROH2AA6NES4 1674 aa-1.09□□□□□ -2.58
VPS35-212ENST00000640313 A0A087WWC5 75 aa-1.09□□□□□ -2.58
VPS35-212ENST00000640313 CENPFP49454 3210 aa-1.09□□□□□ -2.58
VPS35-212ENST00000640313 VCANP13611 3396 aa-1.1□□□□□ -2.59
VPS35-212ENST00000640313 NFAT5O94916 1531 aa-1.1□□□□□ -2.59
VPS35-212ENST00000640313 ABCA5Q8WWZ7 1642 aa-1.11□□□□□ -2.59
VPS35-212ENST00000640313 NDUFA1O15239 70 aa-1.11□□□□□ -2.59
VPS35-212ENST00000640313 DEFB133Q30KQ1 61 aa-1.11□□□□□ -2.59
VPS35-212ENST00000640313 PRXQ9BXM0 1461 aa-1.12□□□□□ -2.59
VPS35-212ENST00000640313 VPS13AQ96RL7 3174 aa-1.12□□□□□ -2.59
VPS35-212ENST00000640313 LINC01590Q5TEZ4 76 aa-1.12□□□□□ -2.59
VPS35-212ENST00000640313 RHPN1-AS1Q9BWJ2 59 aa-1.12□□□□□ -2.59
VPS35-212ENST00000640313 ABCA10Q8WWZ4 1543 aa-1.12□□□□□ -2.59
VPS35-212ENST00000640313 TOMM7Q9P0U1 55 aa-1.13□□□□□ -2.59
VPS35-212ENST00000640313 A0A096LNI7 61 aa-1.15□□□□□ -2.59
VPS35-212ENST00000640313 SMIM5Q71RC9 77 aa-1.15□□□□□ -2.59
VPS35-212ENST00000640313 CMC2Q9NRP2 79 aa-1.15□□□□□ -2.59
VPS35-212ENST00000640313 CLTCL1P53675 1640 aa-1.15□□□□□ -2.59
VPS35-212ENST00000640313 IQGAP1P46940 1657 aa-1.16□□□□□ -2.59
VPS35-212ENST00000640313 FANCD2Q9BXW9 1451 aa-1.17□□□□□ -2.6
VPS35-212ENST00000640313 DDX60Q8IY21 1712 aaKnown RBP-1.17□□□□□ -2.6
VPS35-212ENST00000640313 HTN1P15515 57 aa-1.17□□□□□ -2.6
VPS35-212ENST00000640313 ADCY10Q96PN6 1610 aa-1.18□□□□□ -2.6
VPS35-212ENST00000640313 CD52P31358 61 aa-1.18□□□□□ -2.6
VPS35-212ENST00000640313 DEFB124Q8NES8 71 aa-1.18□□□□□ -2.6
VPS35-212ENST00000640313 ABCC8Q09428 1581 aa-1.18□□□□□ -2.6
VPS35-212ENST00000640313 DUOX1Q9NRD9 1551 aa-1.21□□□□□ -2.6
VPS35-212ENST00000640313 RPL39P62891 51 aaKnown RBP-1.22□□□□□ -2.6
VPS35-212ENST00000640313 SAMD9LQ8IVG5 1584 aa-1.23□□□□□ -2.61
VPS35-212ENST00000640313 RPL39LQ96EH5 51 aaKnown RBP-1.25□□□□□ -2.61
VPS35-212ENST00000640313 UTRNP46939 3433 aa-1.25□□□□□ -2.61
VPS35-212ENST00000640313 TOP2AP11388 1531 aaKnown RBP-1.27□□□□□ -2.61
VPS35-212ENST00000640313 ERICH3Q5RHP9 1530 aa-1.28□□□□□ -2.61
VPS35-212ENST00000640313 SMIM31A0A1B0GVY4 71 aa-1.28□□□□□ -2.61
VPS35-212ENST00000640313 LINC01556Q5JQF7 62 aa-1.28□□□□□ -2.61
VPS35-212ENST00000640313 DEFB104AQ8WTQ1 72 aa-1.28□□□□□ -2.61
VPS35-212ENST00000640313 SNRPGP15A8MWD9 76 aa-1.3□□□□□ -2.62
VPS35-212ENST00000640313 H3BUX3 64 aa-1.32□□□□□ -2.62
VPS35-212ENST00000640313 ATP7AQ04656 1500 aa-1.33□□□□□ -2.62
VPS35-212ENST00000640313 MROH2BQ7Z745 1585 aa-1.36□□□□□ -2.63
VPS35-212ENST00000640313 K7EIM0 57 aa-1.37□□□□□ -2.63
VPS35-212ENST00000640313 GOLGB1Q14789 3259 aaKnown RBP-1.38□□□□□ -2.63
VPS35-212ENST00000640313 TOMM5Q8N4H5 51 aa-1.39□□□□□ -2.63
VPS35-212ENST00000640313 IQGAP2Q13576 1575 aa-1.4□□□□□ -2.63
VPS35-212ENST00000640313 A0A096LPF7 62 aa-1.41□□□□□ -2.64
VPS35-212ENST00000640313 APELAP0DMC3 54 aa-1.41□□□□□ -2.64
VPS35-212ENST00000640313 ARHGAP5-AS1Q96IT6 56 aa-1.44□□□□□ -2.64
VPS35-212ENST00000640313 PRCDQ00LT1 54 aa-1.46□□□□□ -2.64
VPS35-212ENST00000640313 TMEM167AQ8TBQ9 72 aa-1.49□□□□□ -2.65
VPS35-212ENST00000640313 HTN3P15516 51 aa-1.5□□□□□ -2.65
VPS35-212ENST00000640313 SNRPGP62308 76 aaKnown RBP-1.55□□□□□ -2.66
VPS35-212ENST00000640313 RPL39P5Q59GN2 51 aa-1.57□□□□□ -2.66
VPS35-212ENST00000640313 DEFB108AA8MXU0 73 aa-1.59□□□□□ -2.66
VPS35-212ENST00000640313 Q9Y3F1 56 aa-1.59□□□□□ -2.66
VPS35-212ENST00000640313 H3BSH0 61 aa-1.62□□□□□ -2.67
VPS35-212ENST00000640313 GCC2Q8IWJ2 1684 aa-1.64□□□□□ -2.67
VPS35-212ENST00000640313 COX14Q96I36 57 aa-1.67□□□□□ -2.68
VPS35-212ENST00000640313 DEFB108BQ8NET1 73 aa-1.72□□□□□ -2.68
VPS35-212ENST00000640313 STATHP02808 62 aa-1.9□□□□□ -2.71
Retrieved 77 of 20,778 RNA–protein pairs in 11.1 ms