RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TMEM170BQ5T4T1 132 aa1.69□□□□□ -2.14
LINC00540-201ENST00000611481 SPRR1BP22528 89 aa1.68□□□□□ -2.14
LINC00540-201ENST00000611481 HIGD1BQ9P298 99 aa1.68□□□□□ -2.14
LINC00540-201ENST00000611481 D6R8Y8 96 aa1.67□□□□□ -2.14
LINC00540-201ENST00000611481 KRTAP12-4P60329 112 aa1.67□□□□□ -2.14
LINC00540-201ENST00000611481 MT1XP80297 61 aa1.67□□□□□ -2.14
LINC00540-201ENST00000611481 LINC00575Q6W349 94 aa1.67□□□□□ -2.14
LINC00540-201ENST00000611481 SMIM2Q9BVW6 85 aa1.67□□□□□ -2.14
LINC00540-201ENST00000611481 IGIPA6NJ69 53 aa1.66□□□□□ -2.14
LINC00540-201ENST00000611481 PLNP26678 52 aa1.66□□□□□ -2.14
LINC00540-201ENST00000611481 COX17Q14061 63 aa1.66□□□□□ -2.14
LINC00540-201ENST00000611481 ETDBQ3ZM63 59 aa1.66□□□□□ -2.14
LINC00540-201ENST00000611481 SFTA2Q6UW10 78 aa1.66□□□□□ -2.14
LINC00540-201ENST00000611481 WFDC13Q8IUB5 93 aa1.65□□□□□ -2.15
LINC00540-201ENST00000611481 DEFB105AQ8NG35 78 aa1.65□□□□□ -2.15
LINC00540-201ENST00000611481 MYMXA0A1B0GTQ4 84 aa1.64□□□□□ -2.15
LINC00540-201ENST00000611481 LINC01549A6NIU2 74 aa1.64□□□□□ -2.15
LINC00540-201ENST00000611481 LINC00158P58513 81 aa1.64□□□□□ -2.15
LINC00540-201ENST00000611481 KRTAP12-1P59990 96 aa1.64□□□□□ -2.15
LINC00540-201ENST00000611481 KRTAP20-2Q3LI61 65 aa1.64□□□□□ -2.15
LINC00540-201ENST00000611481 LINC01546A6NGU7 62 aa1.63□□□□□ -2.15
LINC00540-201ENST00000611481 ZNF815PA8K554 130 aa1.63□□□□□ -2.15
LINC00540-201ENST00000611481 K7EMI3 77 aa1.63□□□□□ -2.15
LINC00540-201ENST00000611481 UQCR11O14957 56 aa1.63□□□□□ -2.15
LINC00540-201ENST00000611481 SPINK7P58062 85 aa1.63□□□□□ -2.15
LINC00540-201ENST00000611481 LINC01558Q9Y6Z2 57 aa1.63□□□□□ -2.15
LINC00540-201ENST00000611481 ATXN8Q156A1 80 aa1.62□□□□□ -2.15
LINC00540-201ENST00000611481 H1FX-AS1Q4G0G2 97 aa1.62□□□□□ -2.15
LINC00540-201ENST00000611481 ACYP2P14621 99 aa1.61□□□□□ -2.15
LINC00540-201ENST00000611481 ACYP1P07311 99 aa1.6□□□□□ -2.15
LINC00540-201ENST00000611481 KRTAP19-3Q7Z4W3 81 aa1.6□□□□□ -2.15
LINC00540-201ENST00000611481 F8WEM9 126 aa1.59□□□□□ -2.15
LINC00540-201ENST00000611481 LINC00643Q86TS7 51 aa1.58□□□□□ -2.16
LINC00540-201ENST00000611481 MUSTN1Q8IVN3 82 aa1.58□□□□□ -2.16
LINC00540-201ENST00000611481 SMIM11BQ8TCY0 68 aa1.57□□□□□ -2.16
LINC00540-201ENST00000611481 PRR15LQ9BU68 103 aa1.57□□□□□ -2.16
LINC00540-201ENST00000611481 H0YAA0 97 aa1.55□□□□□ -2.16
LINC00540-201ENST00000611481 PLAC4Q8WY50 150 aa1.55□□□□□ -2.16
LINC00540-201ENST00000611481 KRTAP12-3P60328 96 aa1.54□□□□□ -2.16
LINC00540-201ENST00000611481 A0A087WVE0 104 aa1.53□□□□□ -2.16
LINC00540-201ENST00000611481 H0YGX0 51 aa1.53□□□□□ -2.16
LINC00540-201ENST00000611481 ATP5EP2Q5VTU8 51 aa1.53□□□□□ -2.16
LINC00540-201ENST00000611481 Q6JHZ5 121 aa1.53□□□□□ -2.16
LINC00540-201ENST00000611481 LINC00308Q8TCZ7 52 aa1.53□□□□□ -2.16
LINC00540-201ENST00000611481 LINC00472Q9H8W2 130 aa1.53□□□□□ -2.16
LINC00540-201ENST00000611481 IGLV5-48A0A075B6I7 105 aa1.52□□□□□ -2.17
LINC00540-201ENST00000611481 MT1EP04732 61 aa1.52□□□□□ -2.17
LINC00540-201ENST00000611481 COX7BP24311 80 aa1.52□□□□□ -2.17
LINC00540-201ENST00000611481 CRIPTQ9P021 101 aa1.52□□□□□ -2.17
LINC00540-201ENST00000611481 SYNE1Q8NF91 8797 aaKnown RBP1.52□□□□□ -2.17
LINC00540-201ENST00000611481 UBL5Q9BZL1 73 aa1.51□□□□□ -2.17
LINC00540-201ENST00000611481 MT1GP13640 62 aa1.5□□□□□ -2.17
LINC00540-201ENST00000611481 KRTAP19-7Q3SYF9 63 aa1.5□□□□□ -2.17
LINC00540-201ENST00000611481 H0Y9P7 68 aa1.48□□□□□ -2.17
LINC00540-201ENST00000611481 MT1MQ8N339 61 aa1.48□□□□□ -2.17
LINC00540-201ENST00000611481 SPATA8Q6RVD6 105 aa1.46□□□□□ -2.18
LINC00540-201ENST00000611481 NREPQ16612 68 aa1.45□□□□□ -2.18
LINC00540-201ENST00000611481 S4R3F8 94 aa1.44□□□□□ -2.18
LINC00540-201ENST00000611481 TRBV7-4A0A0J9YYF1 115 aa1.42□□□□□ -2.18
LINC00540-201ENST00000611481 NDUFB1O75438 58 aa1.41□□□□□ -2.18
LINC00540-201ENST00000611481 A0A1B0GU69 56 aa1.39□□□□□ -2.19
LINC00540-201ENST00000611481 K7EQZ3 153 aa1.36□□□□□ -2.19
LINC00540-201ENST00000611481 MT1LQ93083 61 aa1.36□□□□□ -2.19
LINC00540-201ENST00000611481 KRTAP19-5Q3LI72 72 aa1.35□□□□□ -2.19
LINC00540-201ENST00000611481 TP53AIP1Q9HCN2 124 aa1.34□□□□□ -2.19
LINC00540-201ENST00000611481 C10orf95Q9H7T3 257 aa1.31□□□□□ -2.2
LINC00540-201ENST00000611481 MMP24-AS1A0A0U1RRL7 71 aa1.29□□□□□ -2.2
LINC00540-201ENST00000611481 MRPL34Q9BQ48 92 aaKnown RBP1.29□□□□□ -2.2
LINC00540-201ENST00000611481 M0QZ58 72 aa1.28□□□□□ -2.2
LINC00540-201ENST00000611481 A0A0D9SG42 100 aa1.27□□□□□ -2.21
LINC00540-201ENST00000611481 PHGR1C9JFL3 82 aa1.26□□□□□ -2.21
LINC00540-201ENST00000611481 KRTAP6-2Q3LI66 62 aa1.23□□□□□ -2.21
LINC00540-201ENST00000611481 KRTAP6-1Q3LI64 71 aa1.19□□□□□ -2.22
LINC00540-201ENST00000611481 MT1AP04731 61 aa1.15□□□□□ -2.23
LINC00540-201ENST00000611481 TNP1P09430 55 aa0.96□□□□□ -2.26
LINC00540-201ENST00000611481 KRTAP21-1Q3LI58 79 aa0.94□□□□□ -2.26
LINC00540-201ENST00000611481 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
LINC00540-201ENST00000611481 PRM1P04553 51 aa0.65□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 92.4 ms