RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MT1XP80297 61 aa3.56□□□□□ -1.84
USP28-215ENST00000545608 SPRR2FQ96RM1 72 aa3.56□□□□□ -1.84
USP28-215ENST00000545608 LCE1FQ5T754 118 aa3.55□□□□□ -1.84
USP28-215ENST00000545608 SPRR2EP22531 72 aa3.54□□□□□ -1.84
USP28-215ENST00000545608 SPRR2BP35325 72 aa3.54□□□□□ -1.84
USP28-215ENST00000545608 SPRR2AP35326 72 aa3.54□□□□□ -1.84
USP28-215ENST00000545608 SPINT4Q6UDR6 99 aa3.54□□□□□ -1.84
USP28-215ENST00000545608 KRTAP5-3Q6L8H2 238 aa3.53□□□□□ -1.84
USP28-215ENST00000545608 PRO2289Q9P1D8 64 aa3.53□□□□□ -1.84
USP28-215ENST00000545608 MDN1Q9NU22 5596 aa3.52□□□□□ -1.85
USP28-215ENST00000545608 CAMK2N1Q7Z7J9 78 aa3.51□□□□□ -1.85
USP28-215ENST00000545608 KRTAP8-1Q8IUC2 63 aa3.51□□□□□ -1.85
USP28-215ENST00000545608 PLAC4Q8WY50 150 aa3.51□□□□□ -1.85
USP28-215ENST00000545608 P0C880 135 aa3.48□□□□□ -1.85
USP28-215ENST00000545608 KRTAP12-2P59991 146 aa3.48□□□□□ -1.85
USP28-215ENST00000545608 R4GN34 69 aa3.47□□□□□ -1.85
USP28-215ENST00000545608 KRTAP2-1Q9BYU5 128 aa3.46□□□□□ -1.86
USP28-215ENST00000545608 M0QZ58 72 aa3.44□□□□□ -1.86
USP28-215ENST00000545608 SPRR2DP22532 72 aa3.42□□□□□ -1.86
USP28-215ENST00000545608 KRTAP10-12P60413 245 aa3.42□□□□□ -1.86
USP28-215ENST00000545608 KRTAP10-7P60409 375 aaPredicted RBP3.4□□□□□ -1.87
USP28-215ENST00000545608 A0A0D9SG42 100 aa3.36□□□□□ -1.87
USP28-215ENST00000545608 LCE3CQ5T5A8 94 aa3.31□□□□□ -1.88
USP28-215ENST00000545608 KRTAP13-4Q3LI77 160 aa3.27□□□□□ -1.89
USP28-215ENST00000545608 C10orf95Q9H7T3 257 aa3.27□□□□□ -1.89
USP28-215ENST00000545608 KRTAP12-1P59990 96 aa3.25□□□□□ -1.89
USP28-215ENST00000545608 LUZP6Q538Z0 58 aa3.25□□□□□ -1.89
USP28-215ENST00000545608 PP632Q6XCG6 107 aa3.21□□□□□ -1.9
USP28-215ENST00000545608 KRTAP19-7Q3SYF9 63 aa3.19□□□□□ -1.9
USP28-215ENST00000545608 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
USP28-215ENST00000545608 MT1EP04732 61 aa3.16□□□□□ -1.9
USP28-215ENST00000545608 KRTAP19-3Q7Z4W3 81 aa3.16□□□□□ -1.9
USP28-215ENST00000545608 DSTQ03001 7570 aaKnown RBP3.14□□□□□ -1.91
USP28-215ENST00000545608 MT1GP13640 62 aa3.07□□□□□ -1.92
USP28-215ENST00000545608 KRTAP19-5Q3LI72 72 aa3.07□□□□□ -1.92
USP28-215ENST00000545608 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
USP28-215ENST00000545608 MT4P47944 62 aa3.02□□□□□ -1.93
USP28-215ENST00000545608 MT1MQ8N339 61 aa3.02□□□□□ -1.93
USP28-215ENST00000545608 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
USP28-215ENST00000545608 MT1LQ93083 61 aa3□□□□□ -1.93
USP28-215ENST00000545608 KRTAP4-3Q9BYR4 195 aa2.98□□□□□ -1.93
USP28-215ENST00000545608 TNP1P09430 55 aa2.97□□□□□ -1.93
USP28-215ENST00000545608 KRTAP5-4Q6L8H1 288 aa2.95□□□□□ -1.94
USP28-215ENST00000545608 LCE3AQ5TA76 89 aa2.94□□□□□ -1.94
USP28-215ENST00000545608 INE1O15225 51 aa2.91□□□□□ -1.94
USP28-215ENST00000545608 KRTAP5-10Q6L8G5 202 aa2.91□□□□□ -1.94
USP28-215ENST00000545608 HMCN1Q96RW7 5635 aa2.9□□□□□ -1.94
USP28-215ENST00000545608 SPRR5A0A1B0GTR4 108 aa2.9□□□□□ -1.95
USP28-215ENST00000545608 KRTAP9-6A8MVA2 160 aa2.9□□□□□ -1.95
USP28-215ENST00000545608 KRTAP5-11Q6L8G4 156 aa2.88□□□□□ -1.95
USP28-215ENST00000545608 AHNAK2Q8IVF2 5795 aa2.83□□□□□ -1.96
USP28-215ENST00000545608 KRTAP12-3P60328 96 aa2.82□□□□□ -1.96
USP28-215ENST00000545608 KRTAP5-7Q6L8G8 165 aa2.8□□□□□ -1.96
USP28-215ENST00000545608 KRTAP20-2Q3LI61 65 aa2.79□□□□□ -1.96
USP28-215ENST00000545608 KRTAP5-5Q701N2 237 aaPredicted RBP2.78□□□□□ -1.96
USP28-215ENST00000545608 KRTAP12-4P60329 112 aa2.72□□□□□ -1.97
USP28-215ENST00000545608 SYNE1Q8NF91 8797 aaKnown RBP2.67□□□□□ -1.98
USP28-215ENST00000545608 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
USP28-215ENST00000545608 LCE3DQ9BYE3 92 aa2.58□□□□□ -2
USP28-215ENST00000545608 KRTAP5-2Q701N4 177 aa2.56□□□□□ -2
USP28-215ENST00000545608 MT1AP04731 61 aa2.55□□□□□ -2
USP28-215ENST00000545608 KRTAP6-1Q3LI64 71 aa2.55□□□□□ -2
USP28-215ENST00000545608 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
USP28-215ENST00000545608 KRTAP6-2Q3LI66 62 aa2.46□□□□□ -2.02
USP28-215ENST00000545608 OBSCNQ5VST9 7968 aa2.39□□□□□ -2.03
USP28-215ENST00000545608 MUC5ACP98088 5654 aa2.36□□□□□ -2.03
USP28-215ENST00000545608 MUC5BQ9HC84 5762 aaPredicted RBP2.34□□□□□ -2.03
USP28-215ENST00000545608 KRTAP5-1Q6L8H4 278 aa2.33□□□□□ -2.04
USP28-215ENST00000545608 AHNAKQ09666 5890 aaKnown RBP2.32□□□□□ -2.04
USP28-215ENST00000545608 KRTAP4-4Q9BYR3 166 aa2.15□□□□□ -2.07
USP28-215ENST00000545608 LCE1CQ5T751 118 aa2.13□□□□□ -2.07
USP28-215ENST00000545608 LCE1BQ5T7P3 118 aa2.13□□□□□ -2.07
USP28-215ENST00000545608 PRM1P04553 51 aa1.86□□□□□ -2.11
USP28-215ENST00000545608 PHGR1C9JFL3 82 aa1.7□□□□□ -2.14
USP28-215ENST00000545608 KRTAP21-2Q3LI59 83 aa1.68□□□□□ -2.14
USP28-215ENST00000545608 MUC19Q7Z5P9 8384 aa1.64□□□□□ -2.15
USP28-215ENST00000545608 KRTAP21-1Q3LI58 79 aa1.28□□□□□ -2.2
USP28-215ENST00000545608 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 151.8 ms