RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 LINC01556Q5JQF7 62 aa-0.75□□□□□ -2.53
CD44-238ENST00000534296 DEFB106AQ8N104 65 aa-0.75□□□□□ -2.53
CD44-238ENST00000534296 COX14Q96I36 57 aa-0.75□□□□□ -2.53
CD44-238ENST00000534296 SPART-AS1P0CW21 52 aa-0.76□□□□□ -2.53
CD44-238ENST00000534296 BVES-AS1Q5T3Y7 98 aa-0.76□□□□□ -2.53
CD44-238ENST00000534296 H3BUT2 72 aa-0.77□□□□□ -2.53
CD44-238ENST00000534296 SMIM13P0DJ93 91 aa-0.78□□□□□ -2.53
CD44-238ENST00000534296 UBL5Q9BZL1 73 aa-0.78□□□□□ -2.53
CD44-238ENST00000534296 KCNQ1DNQ9H478 68 aa-0.78□□□□□ -2.53
CD44-238ENST00000534296 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.79□□□□□ -2.54
CD44-238ENST00000534296 CLPSL2Q6UWE3 100 aa-0.8□□□□□ -2.54
CD44-238ENST00000534296 LEAP2Q969E1 77 aa-0.81□□□□□ -2.54
CD44-238ENST00000534296 WFDC10BQ8IUB3 73 aa-0.82□□□□□ -2.54
CD44-238ENST00000534296 C18orf32Q8TCD1 76 aa-0.82□□□□□ -2.54
CD44-238ENST00000534296 APELAP0DMC3 54 aa-0.83□□□□□ -2.54
CD44-238ENST00000534296 A0A096LPF7 62 aa-0.84□□□□□ -2.54
CD44-238ENST00000534296 A8MTW9 85 aa-0.84□□□□□ -2.54
CD44-238ENST00000534296 MMP24-AS1A0A0U1RRL7 71 aa-0.85□□□□□ -2.55
CD44-238ENST00000534296 CRIP1P50238 77 aa-0.85□□□□□ -2.55
CD44-238ENST00000534296 DEFB114Q30KQ6 69 aa-0.85□□□□□ -2.55
CD44-238ENST00000534296 A0A096LNI7 61 aa-0.86□□□□□ -2.55
CD44-238ENST00000534296 TNP1P09430 55 aa-0.86□□□□□ -2.55
CD44-238ENST00000534296 LINC01546A6NGU7 62 aa-0.87□□□□□ -2.55
CD44-238ENST00000534296 HTN1P15515 57 aa-0.87□□□□□ -2.55
CD44-238ENST00000534296 MINOS1Q5TGZ0 78 aa-0.87□□□□□ -2.55
CD44-238ENST00000534296 H3BVH4 76 aa-0.88□□□□□ -2.55
CD44-238ENST00000534296 WT1-ASQ06250 92 aa-0.88□□□□□ -2.55
CD44-238ENST00000534296 SFTA3P0C7M3 94 aa-0.89□□□□□ -2.55
CD44-238ENST00000534296 RPS27P42677 84 aaKnown RBP-0.89□□□□□ -2.55
CD44-238ENST00000534296 ETDCA0A1B0GVM5 59 aa-0.9□□□□□ -2.55
CD44-238ENST00000534296 H3BUA1 57 aa-0.9□□□□□ -2.55
CD44-238ENST00000534296 ENHOQ6UWT2 76 aa-0.9□□□□□ -2.55
CD44-238ENST00000534296 M0QZ58 72 aa-0.91□□□□□ -2.56
CD44-238ENST00000534296 IGLV5-48A0A075B6I7 105 aa-0.92□□□□□ -2.56
CD44-238ENST00000534296 NOP10Q9NPE3 64 aaKnown RBP-0.92□□□□□ -2.56
CD44-238ENST00000534296 M0R1W7 72 aa-0.94□□□□□ -2.56
CD44-238ENST00000534296 HILPDAQ9Y5L2 63 aa-0.94□□□□□ -2.56
CD44-238ENST00000534296 FCER1GP30273 86 aa-0.95□□□□□ -2.56
CD44-238ENST00000534296 C6orf48Q9UBA6 75 aa-0.95□□□□□ -2.56
CD44-238ENST00000534296 DEFB131AP59861 70 aa-0.96□□□□□ -2.56
CD44-238ENST00000534296 NCBP2-AS2Q69YL0 99 aa-0.96□□□□□ -2.56
CD44-238ENST00000534296 ATXN8Q156A1 80 aa-0.98□□□□□ -2.57
CD44-238ENST00000534296 RHPN1-AS1Q9BWJ2 59 aa-0.99□□□□□ -2.57
CD44-238ENST00000534296 M0QY20 66 aa-1□□□□□ -2.57
CD44-238ENST00000534296 GNG13Q9P2W3 67 aa-1□□□□□ -2.57
CD44-238ENST00000534296 KAAG1Q9UBP8 84 aa-1.02□□□□□ -2.57
CD44-238ENST00000534296 ABRACLQ9P1F3 81 aa-1.05□□□□□ -2.58
CD44-238ENST00000534296 A0A087WWC5 75 aa-1.07□□□□□ -2.58
CD44-238ENST00000534296 POLR2KP53803 58 aaKnown RBP-1.07□□□□□ -2.58
CD44-238ENST00000534296 TMEM167AQ8TBQ9 72 aa-1.09□□□□□ -2.58
CD44-238ENST00000534296 SMCO4Q9NRQ5 59 aa-1.09□□□□□ -2.58
CD44-238ENST00000534296 K7EMI3 77 aa-1.11□□□□□ -2.59
CD44-238ENST00000534296 PDCD5O14737 125 aa-1.11□□□□□ -2.59
CD44-238ENST00000534296 LINC01549A6NIU2 74 aa-1.12□□□□□ -2.59
CD44-238ENST00000534296 PRCDQ00LT1 54 aa-1.12□□□□□ -2.59
CD44-238ENST00000534296 SERF2P84101 59 aa-1.14□□□□□ -2.59
CD44-238ENST00000534296 SMIM27A0A1W2PRY6 76 aa-1.16□□□□□ -2.6
CD44-238ENST00000534296 NDUFA1O15239 70 aa-1.18□□□□□ -2.6
CD44-238ENST00000534296 LINC01590Q5TEZ4 76 aa-1.18□□□□□ -2.6
CD44-238ENST00000534296 TMEM167BQ9NRX6 74 aa-1.18□□□□□ -2.6
CD44-238ENST00000534296 IGIPA6NJ69 53 aa-1.19□□□□□ -2.6
CD44-238ENST00000534296 NMES1Q9C002 83 aa-1.19□□□□□ -2.6
CD44-238ENST00000534296 LINC00308Q8TCZ7 52 aa-1.21□□□□□ -2.6
CD44-238ENST00000534296 SMIM2Q9BVW6 85 aa-1.23□□□□□ -2.61
CD44-238ENST00000534296 TOMM7Q9P0U1 55 aa-1.25□□□□□ -2.61
CD44-238ENST00000534296 S100ZQ8WXG8 99 aa-1.27□□□□□ -2.61
CD44-238ENST00000534296 K7EIM0 57 aa-1.29□□□□□ -2.62
CD44-238ENST00000534296 H0YGX0 51 aa-1.32□□□□□ -2.62
CD44-238ENST00000534296 RPL39P5Q59GN2 51 aa-1.32□□□□□ -2.62
CD44-238ENST00000534296 RPL39P62891 51 aaKnown RBP-1.34□□□□□ -2.62
CD44-238ENST00000534296 ARHGAP5-AS1Q96IT6 56 aa-1.36□□□□□ -2.63
CD44-238ENST00000534296 RPL39LQ96EH5 51 aaKnown RBP-1.37□□□□□ -2.63
CD44-238ENST00000534296 PLNP26678 52 aa-1.38□□□□□ -2.63
CD44-238ENST00000534296 SNRPGP15A8MWD9 76 aa-1.43□□□□□ -2.64
CD44-238ENST00000534296 SNRPGP62308 76 aaKnown RBP-1.43□□□□□ -2.64
CD44-238ENST00000534296 CMC2Q9NRP2 79 aa-1.47□□□□□ -2.64
CD44-238ENST00000534296 SMIM31A0A1B0GVY4 71 aa-1.49□□□□□ -2.65
CD44-238ENST00000534296 TOMM5Q8N4H5 51 aa-1.69□□□□□ -2.68
Retrieved 78 of 20,778 RNA–protein pairs in 11.8 ms