RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 COX17Q14061 63 aa0.6□□□□□ -2.31
CPNE3-204ENST00000517862 Q6JHZ5 121 aa0.6□□□□□ -2.31
CPNE3-204ENST00000517862 VAMP8Q9BV40 100 aa0.6□□□□□ -2.31
CPNE3-204ENST00000517862 C3orf79P0CE67 100 aa0.58□□□□□ -2.32
CPNE3-204ENST00000517862 POLR2KP53803 58 aaKnown RBP0.58□□□□□ -2.32
CPNE3-204ENST00000517862 S100A16Q96FQ6 103 aaKnown RBP0.58□□□□□ -2.32
CPNE3-204ENST00000517862 MUC16Q8WXI7 14507 aa0.58□□□□□ -2.32
CPNE3-204ENST00000517862 K7EQZ3 153 aa0.57□□□□□ -2.32
CPNE3-204ENST00000517862 ATOX1O00244 68 aa0.57□□□□□ -2.32
CPNE3-204ENST00000517862 CDKN2A-AS1Q9UH64 79 aa0.57□□□□□ -2.32
CPNE3-204ENST00000517862 H7BZZ5 65 aa0.56□□□□□ -2.32
CPNE3-204ENST00000517862 NDUFC1O43677 76 aa0.56□□□□□ -2.32
CPNE3-204ENST00000517862 SERP2Q8N6R1 65 aa0.56□□□□□ -2.32
CPNE3-204ENST00000517862 SMIM2Q9BVW6 85 aa0.56□□□□□ -2.32
CPNE3-204ENST00000517862 A0A087WVE0 104 aa0.55□□□□□ -2.32
CPNE3-204ENST00000517862 A0A087WXM4 84 aa0.55□□□□□ -2.32
CPNE3-204ENST00000517862 M0QZ58 72 aa0.55□□□□□ -2.32
CPNE3-204ENST00000517862 Q9H521 79 aa0.55□□□□□ -2.32
CPNE3-204ENST00000517862 PMCHL1Q16048 86 aa0.54□□□□□ -2.32
CPNE3-204ENST00000517862 SYS1-DBNDD2H3BUS1 97 aa0.53□□□□□ -2.32
CPNE3-204ENST00000517862 IFI27P40305 119 aaPredicted RBP0.53□□□□□ -2.32
CPNE3-204ENST00000517862 LINC00158P58513 81 aa0.52□□□□□ -2.33
CPNE3-204ENST00000517862 C20orf78Q9BR46 151 aa0.51□□□□□ -2.33
CPNE3-204ENST00000517862 CNFNQ9BYD5 112 aa0.51□□□□□ -2.33
CPNE3-204ENST00000517862 TP53AIP1Q9HCN2 124 aa0.51□□□□□ -2.33
CPNE3-204ENST00000517862 HIGD1BQ9P298 99 aa0.51□□□□□ -2.33
CPNE3-204ENST00000517862 SPCS1Q9Y6A9 102 aa0.51□□□□□ -2.33
CPNE3-204ENST00000517862 IGLV5-48A0A075B6I7 105 aa0.5□□□□□ -2.33
CPNE3-204ENST00000517862 SMIM31A0A1B0GVY4 71 aa0.49□□□□□ -2.33
CPNE3-204ENST00000517862 Q5BKY6 102 aa0.49□□□□□ -2.33
CPNE3-204ENST00000517862 TMEM167BQ9NRX6 74 aa0.48□□□□□ -2.33
CPNE3-204ENST00000517862 LEPROTL1O95214 131 aa0.47□□□□□ -2.33
CPNE3-204ENST00000517862 C9orf62Q8N4C0 152 aa0.47□□□□□ -2.33
CPNE3-204ENST00000517862 GNGT1P63211 74 aa0.46□□□□□ -2.34
CPNE3-204ENST00000517862 ETDBQ3ZM63 59 aa0.46□□□□□ -2.34
CPNE3-204ENST00000517862 A0A1B0GU69 56 aa0.45□□□□□ -2.34
CPNE3-204ENST00000517862 TRBV7-4A0A0J9YYF1 115 aa0.44□□□□□ -2.34
CPNE3-204ENST00000517862 H0Y9P7 68 aa0.44□□□□□ -2.34
CPNE3-204ENST00000517862 PYY3Q5JQD4 70 aa0.44□□□□□ -2.34
CPNE3-204ENST00000517862 MUSTN1Q8IVN3 82 aa0.44□□□□□ -2.34
CPNE3-204ENST00000517862 LINC01546A6NGU7 62 aa0.43□□□□□ -2.34
CPNE3-204ENST00000517862 K7EP34 96 aa0.43□□□□□ -2.34
CPNE3-204ENST00000517862 SMIM13P0DJ93 91 aa0.43□□□□□ -2.34
CPNE3-204ENST00000517862 COX7BP24311 80 aa0.43□□□□□ -2.34
CPNE3-204ENST00000517862 PEA15Q15121 130 aa0.42□□□□□ -2.34
CPNE3-204ENST00000517862 IGLC3P0DOY3 106 aa0.39□□□□□ -2.35
CPNE3-204ENST00000517862 H3BUT2 72 aa0.38□□□□□ -2.35
CPNE3-204ENST00000517862 IGIPA6NJ69 53 aa0.37□□□□□ -2.35
CPNE3-204ENST00000517862 MYMXA0A1B0GTQ4 84 aa0.33□□□□□ -2.36
CPNE3-204ENST00000517862 A0A1B0GUT8 65 aa0.32□□□□□ -2.36
CPNE3-204ENST00000517862 LINC00643Q86TS7 51 aa0.32□□□□□ -2.36
CPNE3-204ENST00000517862 COX8AP10176 69 aa0.31□□□□□ -2.36
CPNE3-204ENST00000517862 ADIRFQ15847 76 aa0.29□□□□□ -2.36
CPNE3-204ENST00000517862 KANTRA0A1W2PQU2 76 aa0.28□□□□□ -2.36
CPNE3-204ENST00000517862 ACYP1P07311 99 aa0.28□□□□□ -2.36
CPNE3-204ENST00000517862 SERF2P84101 59 aa0.28□□□□□ -2.36
CPNE3-204ENST00000517862 MRPL34Q9BQ48 92 aaKnown RBP0.27□□□□□ -2.37
CPNE3-204ENST00000517862 NDUFB1O75438 58 aa0.25□□□□□ -2.37
CPNE3-204ENST00000517862 PRM1P04553 51 aa0.23□□□□□ -2.37
CPNE3-204ENST00000517862 TOMM5Q8N4H5 51 aa0.23□□□□□ -2.37
CPNE3-204ENST00000517862 BVES-AS1Q5T3Y7 98 aa0.22□□□□□ -2.37
CPNE3-204ENST00000517862 K7EMI3 77 aa0.21□□□□□ -2.38
CPNE3-204ENST00000517862 UMAD1C9J7I0 102 aa0.18□□□□□ -2.38
CPNE3-204ENST00000517862 TNP1P09430 55 aa0.18□□□□□ -2.38
CPNE3-204ENST00000517862 C18orf32Q8TCD1 76 aa0.16□□□□□ -2.38
CPNE3-204ENST00000517862 MMP24-AS1A0A0U1RRL7 71 aa0.15□□□□□ -2.39
CPNE3-204ENST00000517862 LINC01549A6NIU2 74 aa0.15□□□□□ -2.39
CPNE3-204ENST00000517862 LINC00308Q8TCZ7 52 aa0.15□□□□□ -2.39
CPNE3-204ENST00000517862 GNG13Q9P2W3 67 aa0.15□□□□□ -2.39
CPNE3-204ENST00000517862 NREPQ16612 68 aa0.14□□□□□ -2.39
CPNE3-204ENST00000517862 ATP5EP2Q5VTU8 51 aa0.13□□□□□ -2.39
CPNE3-204ENST00000517862 SMIM27A0A1W2PRY6 76 aa0.07□□□□□ -2.4
CPNE3-204ENST00000517862 SMCO4Q9NRQ5 59 aa0.05□□□□□ -2.4
CPNE3-204ENST00000517862 S100ZQ8WXG8 99 aa-0.01□□□□□ -2.41
CPNE3-204ENST00000517862 PLNP26678 52 aa-0.03□□□□□ -2.41
CPNE3-204ENST00000517862 ATXN8Q156A1 80 aa-0.03□□□□□ -2.41
CPNE3-204ENST00000517862 UBL5Q9BZL1 73 aa-0.04□□□□□ -2.42
CPNE3-204ENST00000517862 H0YGX0 51 aa-0.12□□□□□ -2.43
Retrieved 78 of 20,778 RNA–protein pairs in 41.8 ms