RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 Q8IZM0 81 aa0.84□□□□□ -2.27
USP40-204ENST00000427947 RPL39LQ96EH5 51 aaKnown RBP0.84□□□□□ -2.27
USP40-204ENST00000427947 A0A096LPF7 62 aa0.83□□□□□ -2.28
USP40-204ENST00000427947 RPL39P62891 51 aaKnown RBP0.83□□□□□ -2.28
USP40-204ENST00000427947 BVES-AS1Q5T3Y7 98 aa0.83□□□□□ -2.28
USP40-204ENST00000427947 LINC00643Q86TS7 51 aa0.83□□□□□ -2.28
USP40-204ENST00000427947 NOP10Q9NPE3 64 aaKnown RBP0.83□□□□□ -2.28
USP40-204ENST00000427947 ACYP1P07311 99 aa0.82□□□□□ -2.28
USP40-204ENST00000427947 MT1HL1P0DM35 61 aa0.82□□□□□ -2.28
USP40-204ENST00000427947 DEFB130BP0DP73 79 aa0.82□□□□□ -2.28
USP40-204ENST00000427947 DEFB130AP0DP74 79 aa0.82□□□□□ -2.28
USP40-204ENST00000427947 PLAC8Q9NZF1 115 aa0.82□□□□□ -2.28
USP40-204ENST00000427947 CDKN2A-AS1Q9UH64 79 aa0.82□□□□□ -2.28
USP40-204ENST00000427947 H0YGX0 51 aa0.81□□□□□ -2.28
USP40-204ENST00000427947 SMIM13P0DJ93 91 aa0.81□□□□□ -2.28
USP40-204ENST00000427947 HTN1P15515 57 aa0.81□□□□□ -2.28
USP40-204ENST00000427947 SPRR1AP35321 89 aa0.81□□□□□ -2.28
USP40-204ENST00000427947 ENHOQ6UWT2 76 aa0.81□□□□□ -2.28
USP40-204ENST00000427947 LINC00308Q8TCZ7 52 aa0.81□□□□□ -2.28
USP40-204ENST00000427947 WFDC10BQ8IUB3 73 aa0.8□□□□□ -2.28
USP40-204ENST00000427947 KCNQ1DNQ9H478 68 aa0.8□□□□□ -2.28
USP40-204ENST00000427947 IGLV5-48A0A075B6I7 105 aa0.79□□□□□ -2.28
USP40-204ENST00000427947 H3BUT2 72 aa0.79□□□□□ -2.28
USP40-204ENST00000427947 ATXN8Q156A1 80 aa0.79□□□□□ -2.28
USP40-204ENST00000427947 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
USP40-204ENST00000427947 SPRR1BP22528 89 aa0.78□□□□□ -2.28
USP40-204ENST00000427947 DEFB104AQ8WTQ1 72 aa0.78□□□□□ -2.28
USP40-204ENST00000427947 C6orf48Q9UBA6 75 aa0.78□□□□□ -2.28
USP40-204ENST00000427947 LINC00158P58513 81 aa0.77□□□□□ -2.29
USP40-204ENST00000427947 ATP5EP2Q5VTU8 51 aa0.77□□□□□ -2.29
USP40-204ENST00000427947 SPINK6Q6UWN8 80 aa0.77□□□□□ -2.29
USP40-204ENST00000427947 COX7BP24311 80 aa0.76□□□□□ -2.29
USP40-204ENST00000427947 RPS29P62273 56 aaKnown RBP0.76□□□□□ -2.29
USP40-204ENST00000427947 SPRR2FQ96RM1 72 aa0.76□□□□□ -2.29
USP40-204ENST00000427947 A0A096LNI7 61 aa0.75□□□□□ -2.29
USP40-204ENST00000427947 KRTAP19-3Q7Z4W3 81 aa0.75□□□□□ -2.29
USP40-204ENST00000427947 CRIPTQ9P021 101 aa0.75□□□□□ -2.29
USP40-204ENST00000427947 TOMM7Q9P0U1 55 aa0.75□□□□□ -2.29
USP40-204ENST00000427947 ETDCA0A1B0GVM5 59 aa0.74□□□□□ -2.29
USP40-204ENST00000427947 K7EQZ3 153 aa0.74□□□□□ -2.29
USP40-204ENST00000427947 CLPSL2Q6UWE3 100 aa0.74□□□□□ -2.29
USP40-204ENST00000427947 UBL5Q9BZL1 73 aa0.73□□□□□ -2.29
USP40-204ENST00000427947 SPINK1P00995 79 aa0.72□□□□□ -2.29
USP40-204ENST00000427947 KRTAP19-2Q3LHN2 52 aa0.72□□□□□ -2.29
USP40-204ENST00000427947 PRLHP81277 87 aa0.71□□□□□ -2.3
USP40-204ENST00000427947 NREPQ16612 68 aa0.71□□□□□ -2.3
USP40-204ENST00000427947 NDUFB1O75438 58 aa0.7□□□□□ -2.3
USP40-204ENST00000427947 MT1HP80294 61 aa0.7□□□□□ -2.3
USP40-204ENST00000427947 MMP24-AS1A0A0U1RRL7 71 aa0.69□□□□□ -2.3
USP40-204ENST00000427947 DEFB105AQ8NG35 78 aa0.68□□□□□ -2.3
USP40-204ENST00000427947 MRPL34Q9BQ48 92 aaKnown RBP0.68□□□□□ -2.3
USP40-204ENST00000427947 WFDC13Q8IUB5 93 aa0.67□□□□□ -2.3
USP40-204ENST00000427947 H0YAA0 97 aa0.65□□□□□ -2.31
USP40-204ENST00000427947 C9orf92A6NGG3 77 aa0.64□□□□□ -2.31
USP40-204ENST00000427947 MT2AP02795 61 aa0.64□□□□□ -2.31
USP40-204ENST00000427947 MT1FP04733 61 aa0.64□□□□□ -2.31
USP40-204ENST00000427947 COX6B2Q6YFQ2 88 aa0.63□□□□□ -2.31
USP40-204ENST00000427947 M0R2T5 61 aa0.62□□□□□ -2.31
USP40-204ENST00000427947 H1FX-AS1Q4G0G2 97 aa0.6□□□□□ -2.31
USP40-204ENST00000427947 M0QZ58 72 aa0.59□□□□□ -2.31
USP40-204ENST00000427947 KRTAP20-2Q3LI61 65 aa0.59□□□□□ -2.31
USP40-204ENST00000427947 MT1BP07438 61 aa0.58□□□□□ -2.32
USP40-204ENST00000427947 SPRR2GQ9BYE4 73 aa0.58□□□□□ -2.32
USP40-204ENST00000427947 S4R3F8 94 aa0.58□□□□□ -2.32
USP40-204ENST00000427947 KRTAP19-8Q3LI54 63 aa0.56□□□□□ -2.32
USP40-204ENST00000427947 MT1XP80297 61 aa0.52□□□□□ -2.33
USP40-204ENST00000427947 TNP1P09430 55 aa0.5□□□□□ -2.33
USP40-204ENST00000427947 KRTAP8-1Q8IUC2 63 aa0.5□□□□□ -2.33
USP40-204ENST00000427947 KRTAP19-7Q3SYF9 63 aa0.47□□□□□ -2.33
USP40-204ENST00000427947 MT1EP04732 61 aa0.46□□□□□ -2.34
USP40-204ENST00000427947 MT1GP13640 62 aa0.44□□□□□ -2.34
USP40-204ENST00000427947 KRTAP19-5Q3LI72 72 aa0.44□□□□□ -2.34
USP40-204ENST00000427947 MT1MQ8N339 61 aa0.44□□□□□ -2.34
USP40-204ENST00000427947 MT1LQ93083 61 aa0.44□□□□□ -2.34
USP40-204ENST00000427947 PRM1P04553 51 aa0.41□□□□□ -2.34
USP40-204ENST00000427947 MT1AP04731 61 aa0.39□□□□□ -2.35
USP40-204ENST00000427947 KRTAP6-1Q3LI64 71 aa0.38□□□□□ -2.35
USP40-204ENST00000427947 KRTAP6-2Q3LI66 62 aa0.36□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 37.4 ms