RNA–Protein interactions for RNA: ENST00000620466.4

ALMS1-208, Transcript of ALMS1, centrosome and basal body associated protein, humanhuman

TSL 2

Gene ALMS1, Length 6,720 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1-208ENST00000620466 MT1HL1P0DM35 61 aa3.89□□□□□ -1.79
ALMS1-208ENST00000620466 FBN3Q75N90 2809 aa3.89□□□□□ -1.79
ALMS1-208ENST00000620466 MEGF8Q7Z7M0 2845 aa3.88□□□□□ -1.79
ALMS1-208ENST00000620466 VPS13DQ5THJ4 4388 aa3.88□□□□□ -1.79
ALMS1-208ENST00000620466 CMYA5Q8N3K9 4069 aa3.86□□□□□ -1.79
ALMS1-208ENST00000620466 ANK2Q01484 3957 aa3.82□□□□□ -1.8
ALMS1-208ENST00000620466 DNAH2Q9P225 4427 aa3.82□□□□□ -1.8
ALMS1-208ENST00000620466 DNAH8Q96JB1 4490 aa3.82□□□□□ -1.8
ALMS1-208ENST00000620466 DNAH11Q96DT5 4516 aa3.79□□□□□ -1.8
ALMS1-208ENST00000620466 CRCT1Q9UGL9 99 aa3.79□□□□□ -1.8
ALMS1-208ENST00000620466 STARD9Q9P2P6 4700 aa3.78□□□□□ -1.8
ALMS1-208ENST00000620466 DYNC2H1Q8NCM8 4307 aaKnown RBP3.77□□□□□ -1.81
ALMS1-208ENST00000620466 DNAH5Q8TE73 4624 aa3.75□□□□□ -1.81
ALMS1-208ENST00000620466 KRTAP4-5Q9BYR2 181 aa3.74□□□□□ -1.81
ALMS1-208ENST00000620466 KRTAP10-12P60413 245 aa3.72□□□□□ -1.81
ALMS1-208ENST00000620466 FRAS1Q86XX4 4008 aa3.72□□□□□ -1.81
ALMS1-208ENST00000620466 KRTAP23-1A1A580 65 aa3.7□□□□□ -1.82
ALMS1-208ENST00000620466 LORP23490 312 aaPredicted RBP3.7□□□□□ -1.82
ALMS1-208ENST00000620466 DNAH6Q9C0G6 4158 aa3.69□□□□□ -1.82
ALMS1-208ENST00000620466 KMT2AQ03164 3969 aa3.68□□□□□ -1.82
ALMS1-208ENST00000620466 SACSQ9NZJ4 4579 aa3.68□□□□□ -1.82
ALMS1-208ENST00000620466 LYSTQ99698 3801 aa3.66□□□□□ -1.82
ALMS1-208ENST00000620466 LRP1BQ9NZR2 4599 aa3.65□□□□□ -1.83
ALMS1-208ENST00000620466 FAT2Q9NYQ8 4349 aa3.64□□□□□ -1.83
ALMS1-208ENST00000620466 PRKDCP78527 4128 aaKnown RBP3.64□□□□□ -1.83
ALMS1-208ENST00000620466 DNAH7Q8WXX0 4024 aa3.63□□□□□ -1.83
ALMS1-208ENST00000620466 DYNC1H1Q14204 4646 aaKnown RBP3.63□□□□□ -1.83
ALMS1-208ENST00000620466 COL7A1Q02388 2944 aa3.63□□□□□ -1.83
ALMS1-208ENST00000620466 HECTD4Q9Y4D8 3996 aa3.63□□□□□ -1.83
ALMS1-208ENST00000620466 VPS13BQ7Z7G8 4022 aa3.6□□□□□ -1.83
ALMS1-208ENST00000620466 LCE3AQ5TA76 89 aa3.57□□□□□ -1.84
ALMS1-208ENST00000620466 KRTAP12-3P60328 96 aa3.55□□□□□ -1.84
ALMS1-208ENST00000620466 KRTAP4-1Q9BYQ7 146 aa3.55□□□□□ -1.84
ALMS1-208ENST00000620466 FAT1Q14517 4588 aa3.53□□□□□ -1.84
ALMS1-208ENST00000620466 KRTAP8-1Q8IUC2 63 aa3.48□□□□□ -1.85
ALMS1-208ENST00000620466 DNHD1Q96M86 4753 aa3.46□□□□□ -1.86
ALMS1-208ENST00000620466 APOBP04114 4563 aaKnown RBP3.45□□□□□ -1.86
ALMS1-208ENST00000620466 FAT3Q8TDW7 4589 aa3.44□□□□□ -1.86
ALMS1-208ENST00000620466 KRTAP10-5P60370 271 aa3.43□□□□□ -1.86
ALMS1-208ENST00000620466 HYDINQ4G0P3 5121 aa3.4□□□□□ -1.87
ALMS1-208ENST00000620466 KRTAP17-1Q9BYP8 105 aa3.39□□□□□ -1.87
ALMS1-208ENST00000620466 PKD1P98161 4303 aa3.38□□□□□ -1.87
ALMS1-208ENST00000620466 MT1HP80294 61 aa3.38□□□□□ -1.87
ALMS1-208ENST00000620466 PKHD1L1Q86WI1 4243 aa3.36□□□□□ -1.87
ALMS1-208ENST00000620466 KRTAP10-7P60409 375 aaPredicted RBP3.35□□□□□ -1.87
ALMS1-208ENST00000620466 SPRR2GQ9BYE4 73 aa3.35□□□□□ -1.87
ALMS1-208ENST00000620466 MT2AP02795 61 aa3.33□□□□□ -1.88
ALMS1-208ENST00000620466 RYR1P21817 5038 aa3.32□□□□□ -1.88
ALMS1-208ENST00000620466 LRP1Q07954 4544 aaKnown RBP3.29□□□□□ -1.88
ALMS1-208ENST00000620466 HSPG2P98160 4391 aa3.29□□□□□ -1.88
ALMS1-208ENST00000620466 MT1FP04733 61 aa3.29□□□□□ -1.88
ALMS1-208ENST00000620466 PKHD1P08F94 4074 aa3.28□□□□□ -1.88
ALMS1-208ENST00000620466 RYR2Q92736 4967 aa3.27□□□□□ -1.89
ALMS1-208ENST00000620466 TNXBP22105 4242 aa3.27□□□□□ -1.89
ALMS1-208ENST00000620466 RYR3Q15413 4870 aa3.27□□□□□ -1.89
ALMS1-208ENST00000620466 MYCBP2O75592 4640 aa3.24□□□□□ -1.89
ALMS1-208ENST00000620466 SPRR2FQ96RM1 72 aa3.22□□□□□ -1.89
ALMS1-208ENST00000620466 KRTAP19-5Q3LI72 72 aa3.19□□□□□ -1.9
ALMS1-208ENST00000620466 LPAP08519 4548 aa3.19□□□□□ -1.9
ALMS1-208ENST00000620466 KRTAP19-1Q8IUB9 90 aa3.17□□□□□ -1.9
ALMS1-208ENST00000620466 LCE3CQ5T5A8 94 aa3.14□□□□□ -1.91
ALMS1-208ENST00000620466 KRTAP19-8Q3LI54 63 aa3.12□□□□□ -1.91
ALMS1-208ENST00000620466 KIAA1109Q2LD37 5005 aa3.12□□□□□ -1.91
ALMS1-208ENST00000620466 SPRR2EP22531 72 aa3.11□□□□□ -1.91
ALMS1-208ENST00000620466 SPRR2BP35325 72 aa3.11□□□□□ -1.91
ALMS1-208ENST00000620466 SPRR2AP35326 72 aa3.11□□□□□ -1.91
ALMS1-208ENST00000620466 LRP2P98164 4655 aa3.1□□□□□ -1.91
ALMS1-208ENST00000620466 MT1XP80297 61 aa3.09□□□□□ -1.91
ALMS1-208ENST00000620466 MUC17Q685J3 4493 aa3.09□□□□□ -1.91
ALMS1-208ENST00000620466 KMT2CQ8NEZ4 4911 aaKnown RBP3.08□□□□□ -1.92
ALMS1-208ENST00000620466 HERC1Q15751 4861 aa3.07□□□□□ -1.92
ALMS1-208ENST00000620466 SPRR5A0A1B0GTR4 108 aa3.07□□□□□ -1.92
ALMS1-208ENST00000620466 LCE2CQ5TA81 110 aa3.06□□□□□ -1.92
ALMS1-208ENST00000620466 MT1BP07438 61 aa3.06□□□□□ -1.92
ALMS1-208ENST00000620466 KRTAP9-8Q9BYQ0 159 aa3.05□□□□□ -1.92
ALMS1-208ENST00000620466 KRTAP19-2Q3LHN2 52 aa3.03□□□□□ -1.92
ALMS1-208ENST00000620466 MT3P25713 68 aa3.02□□□□□ -1.93
ALMS1-208ENST00000620466 SPRR2DP22532 72 aa3.01□□□□□ -1.93
ALMS1-208ENST00000620466 LCE3BQ5TA77 95 aa2.98□□□□□ -1.93
ALMS1-208ENST00000620466 KRTAP19-4Q3LI73 84 aa2.98□□□□□ -1.93
ALMS1-208ENST00000620466 KRTAP9-3Q9BYQ3 159 aa2.96□□□□□ -1.94
ALMS1-208ENST00000620466 HERC2O95714 4834 aa2.95□□□□□ -1.94
ALMS1-208ENST00000620466 LCE2BO14633 110 aa2.94□□□□□ -1.94
ALMS1-208ENST00000620466 BIRC6Q9NR09 4857 aa2.92□□□□□ -1.94
ALMS1-208ENST00000620466 KRTAP4-8A0A0G2JLE6 195 aa2.92□□□□□ -1.94
ALMS1-208ENST00000620466 KRTAP4-8Q9BYQ9 185 aa2.92□□□□□ -1.94
ALMS1-208ENST00000620466 FLGP20930 4061 aaPredicted RBP2.92□□□□□ -1.94
ALMS1-208ENST00000620466 MT1GP13640 62 aa2.92□□□□□ -1.94
ALMS1-208ENST00000620466 EPPK1P58107 5090 aaKnown RBP2.86□□□□□ -1.95
ALMS1-208ENST00000620466 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
ALMS1-208ENST00000620466 KRTAP4-7Q9BYR0 210 aa2.81□□□□□ -1.96
ALMS1-208ENST00000620466 ABCA13Q86UQ4 5058 aa2.8□□□□□ -1.96
ALMS1-208ENST00000620466 MT1LQ93083 61 aa2.76□□□□□ -1.97
ALMS1-208ENST00000620466 MT1EP04732 61 aa2.74□□□□□ -1.97
ALMS1-208ENST00000620466 LCE3DQ9BYE3 92 aa2.74□□□□□ -1.97
ALMS1-208ENST00000620466 PCLOQ9Y6V0 5065 aa2.74□□□□□ -1.97
ALMS1-208ENST00000620466 LCE2DQ5TA82 110 aaPredicted RBP2.72□□□□□ -1.97
ALMS1-208ENST00000620466 KRTAP19-3Q7Z4W3 81 aa2.69□□□□□ -1.98
ALMS1-208ENST00000620466 HMCN2Q8NDA2 5059 aa2.68□□□□□ -1.98
ALMS1-208ENST00000620466 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms