RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PPP1R1CQ8WVI7 109 aa1.9□□□□□ -2.11
LINC00540-201ENST00000611481 RPL39LQ96EH5 51 aaKnown RBP1.9□□□□□ -2.11
LINC00540-201ENST00000611481 CCKP06307 115 aa1.89□□□□□ -2.11
LINC00540-201ENST00000611481 PDE6GP18545 87 aa1.89□□□□□ -2.11
LINC00540-201ENST00000611481 IFI27L1Q96BM0 104 aa1.89□□□□□ -2.11
LINC00540-201ENST00000611481 C7orf77A4D0Y5 90 aa1.88□□□□□ -2.11
LINC00540-201ENST00000611481 I3L3M4 83 aa1.88□□□□□ -2.11
LINC00540-201ENST00000611481 Q5VV11 94 aa1.88□□□□□ -2.11
LINC00540-201ENST00000611481 CYP4F30PQ9H0H9 118 aa1.88□□□□□ -2.11
LINC00540-201ENST00000611481 UMAD1C9J7I0 102 aa1.87□□□□□ -2.11
LINC00540-201ENST00000611481 HCG22E2RYF7 251 aa1.87□□□□□ -2.11
LINC00540-201ENST00000611481 INE1O15225 51 aa1.87□□□□□ -2.11
LINC00540-201ENST00000611481 KRTDAPP60985 99 aa1.87□□□□□ -2.11
LINC00540-201ENST00000611481 ZCCHC13Q8WW36 166 aaKnown RBP1.87□□□□□ -2.11
LINC00540-201ENST00000611481 MUC5BQ9HC84 5762 aaPredicted RBP1.86□□□□□ -2.11
LINC00540-201ENST00000611481 TRAV23DV6A0A075B6W5 121 aa1.86□□□□□ -2.11
LINC00540-201ENST00000611481 DNAL4O96015 105 aa1.86□□□□□ -2.11
LINC00540-201ENST00000611481 FAM213BQ8TBF2 198 aa1.86□□□□□ -2.11
LINC00540-201ENST00000611481 TOMM7Q9P0U1 55 aa1.86□□□□□ -2.11
LINC00540-201ENST00000611481 TEX49A0A1B0GTD5 131 aa1.85□□□□□ -2.11
LINC00540-201ENST00000611481 HIGD1CA8MV81 97 aa1.85□□□□□ -2.11
LINC00540-201ENST00000611481 IGKV4-1P06312 121 aa1.85□□□□□ -2.11
LINC00540-201ENST00000611481 GCHFRP30047 84 aa1.85□□□□□ -2.11
LINC00540-201ENST00000611481 PYY3Q5JQD4 70 aa1.85□□□□□ -2.11
LINC00540-201ENST00000611481 PMCHL2Q9BQD1 86 aa1.85□□□□□ -2.11
LINC00540-201ENST00000611481 PRO1933Q9H354 126 aa1.85□□□□□ -2.11
LINC00540-201ENST00000611481 MUC5ACP98088 5654 aa1.84□□□□□ -2.11
LINC00540-201ENST00000611481 LOC110117498A0A087WWA1 95 aa1.84□□□□□ -2.11
LINC00540-201ENST00000611481 hADV29S1A0JD25 119 aa1.84□□□□□ -2.11
LINC00540-201ENST00000611481 SNURFQ9Y675 71 aa1.84□□□□□ -2.11
LINC00540-201ENST00000611481 ATOX1O00244 68 aa1.83□□□□□ -2.12
LINC00540-201ENST00000611481 SPATA45Q537H7 98 aa1.83□□□□□ -2.12
LINC00540-201ENST00000611481 ZNF625Q96I27 306 aaPredicted RBP1.83□□□□□ -2.12
LINC00540-201ENST00000611481 OBSCN-AS1Q96MR7 158 aa1.83□□□□□ -2.12
LINC00540-201ENST00000611481 GNG13Q9P2W3 67 aa1.83□□□□□ -2.12
LINC00540-201ENST00000611481 F8VRH5 84 aa1.82□□□□□ -2.12
LINC00540-201ENST00000611481 FCER1GP30273 86 aa1.82□□□□□ -2.12
LINC00540-201ENST00000611481 ADIRFQ15847 76 aa1.82□□□□□ -2.12
LINC00540-201ENST00000611481 KRTAP19-8Q3LI54 63 aa1.82□□□□□ -2.12
LINC00540-201ENST00000611481 ST20Q9HBF5 79 aa1.82□□□□□ -2.12
LINC00540-201ENST00000611481 TMEM167BQ9NRX6 74 aa1.82□□□□□ -2.12
LINC00540-201ENST00000611481 TRBV7-7A0A0K0K1E9 115 aa1.81□□□□□ -2.12
LINC00540-201ENST00000611481 SERF2P84101 59 aa1.81□□□□□ -2.12
LINC00540-201ENST00000611481 MANBALQ9NQG1 85 aa1.81□□□□□ -2.12
LINC00540-201ENST00000611481 CTXND1A0A1B0GTU2 59 aa1.8□□□□□ -2.12
LINC00540-201ENST00000611481 NDUFC1O43677 76 aa1.8□□□□□ -2.12
LINC00540-201ENST00000611481 SEC11AP67812 179 aa1.8□□□□□ -2.12
LINC00540-201ENST00000611481 BAGE3Q86Y29 109 aa1.8□□□□□ -2.12
LINC00540-201ENST00000611481 BAGE2Q86Y30 109 aa1.8□□□□□ -2.12
LINC00540-201ENST00000611481 Q8IZM0 81 aa1.8□□□□□ -2.12
LINC00540-201ENST00000611481 LOC101927531A0A1B0GV80 90 aa1.79□□□□□ -2.12
LINC00540-201ENST00000611481 ETDCA0A1B0GVM5 59 aa1.79□□□□□ -2.12
LINC00540-201ENST00000611481 F2Z2F3 143 aa1.79□□□□□ -2.12
LINC00540-201ENST00000611481 K7EP34 96 aa1.79□□□□□ -2.12
LINC00540-201ENST00000611481 POLR2KP53803 58 aaKnown RBP1.79□□□□□ -2.12
LINC00540-201ENST00000611481 RPL39P62891 51 aaKnown RBP1.79□□□□□ -2.12
LINC00540-201ENST00000611481 C20orf197Q8N268 126 aa1.79□□□□□ -2.12
LINC00540-201ENST00000611481 Q96NJ1 140 aa1.79□□□□□ -2.12
LINC00540-201ENST00000611481 CNFNQ9BYD5 112 aa1.79□□□□□ -2.12
LINC00540-201ENST00000611481 UQCR10Q9UDW1 63 aa1.79□□□□□ -2.12
LINC00540-201ENST00000611481 ELOF1P60002 83 aaKnown RBP1.78□□□□□ -2.12
LINC00540-201ENST00000611481 KRTAP13-4Q3LI77 160 aa1.78□□□□□ -2.12
LINC00540-201ENST00000611481 SERP2Q8N6R1 65 aa1.78□□□□□ -2.12
LINC00540-201ENST00000611481 CYSTM1Q9H1C7 97 aa1.78□□□□□ -2.12
LINC00540-201ENST00000611481 PMCHL1Q16048 86 aa1.77□□□□□ -2.13
LINC00540-201ENST00000611481 COX7B2Q8TF08 81 aa1.77□□□□□ -2.13
LINC00540-201ENST00000611481 IGKV3D-7A0A0C4DH55 119 aa1.76□□□□□ -2.13
LINC00540-201ENST00000611481 SPRR1AP35321 89 aa1.76□□□□□ -2.13
LINC00540-201ENST00000611481 PRO1854Q9UHT4 67 aa1.76□□□□□ -2.13
LINC00540-201ENST00000611481 COX6CP09669 75 aa1.75□□□□□ -2.13
LINC00540-201ENST00000611481 C3orf79P0CE67 100 aa1.75□□□□□ -2.13
LINC00540-201ENST00000611481 IGLC3P0DOY3 106 aa1.75□□□□□ -2.13
LINC00540-201ENST00000611481 TRAV22A0A0B4J277 110 aa1.74□□□□□ -2.13
LINC00540-201ENST00000611481 SYS1-DBNDD2H3BUS1 97 aa1.74□□□□□ -2.13
LINC00540-201ENST00000611481 C20orf78Q9BR46 151 aa1.74□□□□□ -2.13
LINC00540-201ENST00000611481 SPRR2GQ9BYE4 73 aa1.74□□□□□ -2.13
LINC00540-201ENST00000611481 SMIM27A0A1W2PRY6 76 aa1.73□□□□□ -2.13
LINC00540-201ENST00000611481 CHKB-CPT1BH3BT56 60 aa1.73□□□□□ -2.13
LINC00540-201ENST00000611481 LEPROTL1O95214 131 aa1.73□□□□□ -2.13
LINC00540-201ENST00000611481 KLKP1Q107X0 134 aa1.73□□□□□ -2.13
LINC00540-201ENST00000611481 C18orf32Q8TCD1 76 aa1.73□□□□□ -2.13
LINC00540-201ENST00000611481 KCNQ1DNQ9H478 68 aa1.73□□□□□ -2.13
LINC00540-201ENST00000611481 CDKN2A-AS1Q9UH64 79 aa1.73□□□□□ -2.13
LINC00540-201ENST00000611481 V9GYV3 84 aa1.73□□□□□ -2.13
LINC00540-201ENST00000611481 H7BZZ5 65 aa1.72□□□□□ -2.13
LINC00540-201ENST00000611481 PPP1R17O96001 155 aa1.72□□□□□ -2.13
LINC00540-201ENST00000611481 IFI27P40305 119 aaPredicted RBP1.72□□□□□ -2.13
LINC00540-201ENST00000611481 BVES-AS1Q5T3Y7 98 aa1.72□□□□□ -2.13
LINC00540-201ENST00000611481 Q6ZQY7 126 aa1.72□□□□□ -2.13
LINC00540-201ENST00000611481 H3BUT2 72 aa1.71□□□□□ -2.14
LINC00540-201ENST00000611481 NCR3O14931 201 aa1.71□□□□□ -2.14
LINC00540-201ENST00000611481 COX8AP10176 69 aa1.71□□□□□ -2.14
LINC00540-201ENST00000611481 Q6ZRX8 168 aa1.71□□□□□ -2.14
LINC00540-201ENST00000611481 LINC00208Q96KT6 92 aa1.71□□□□□ -2.14
LINC00540-201ENST00000611481 NXT2Q9NPJ8 142 aaKnown RBP1.71□□□□□ -2.14
LINC00540-201ENST00000611481 SPCS1Q9Y6A9 102 aa1.71□□□□□ -2.14
LINC00540-201ENST00000611481 A0A1B0GUT8 65 aa1.7□□□□□ -2.14
LINC00540-201ENST00000611481 SMIM13P0DJ93 91 aa1.7□□□□□ -2.14
LINC00540-201ENST00000611481 AMELXQ99217 191 aa1.7□□□□□ -2.14
LINC00540-201ENST00000611481 A0A1W2PPM0 123 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms