RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 TENM1Q9UKZ4 2725 aa2.39□□□□□ -2.03
SS18-223ENST00000583595 SVEP1Q4LDE5 3571 aa2.39□□□□□ -2.03
SS18-223ENST00000583595 LCE3DQ9BYE3 92 aa2.37□□□□□ -2.03
SS18-223ENST00000583595 SSBP3-AS1Q7Z2R9 100 aa2.36□□□□□ -2.03
SS18-223ENST00000583595 NOTCH1P46531 2555 aa2.34□□□□□ -2.03
SS18-223ENST00000583595 H0YAA0 97 aa2.34□□□□□ -2.03
SS18-223ENST00000583595 H3BNG1 76 aa2.34□□□□□ -2.03
SS18-223ENST00000583595 K7EIL1 84 aa2.34□□□□□ -2.03
SS18-223ENST00000583595 SPART-AS1P0CW21 52 aa2.34□□□□□ -2.03
SS18-223ENST00000583595 TGP01266 2768 aa2.34□□□□□ -2.04
SS18-223ENST00000583595 TRRAPQ9Y4A5 3859 aa2.33□□□□□ -2.04
SS18-223ENST00000583595 PRLHP81277 87 aa2.33□□□□□ -2.04
SS18-223ENST00000583595 Q6ZSA8 131 aa2.33□□□□□ -2.04
SS18-223ENST00000583595 PKD1L1Q8TDX9 2849 aa2.33□□□□□ -2.04
SS18-223ENST00000583595 PRKDCP78527 4128 aaKnown RBP2.33□□□□□ -2.04
SS18-223ENST00000583595 LINC01556Q5JQF7 62 aa2.32□□□□□ -2.04
SS18-223ENST00000583595 PP632Q6XCG6 107 aa2.32□□□□□ -2.04
SS18-223ENST00000583595 VWFP04275 2813 aa2.32□□□□□ -2.04
SS18-223ENST00000583595 HTN3P15516 51 aa2.31□□□□□ -2.04
SS18-223ENST00000583595 H1FX-AS1Q4G0G2 97 aa2.31□□□□□ -2.04
SS18-223ENST00000583595 CMYA5Q8N3K9 4069 aa2.31□□□□□ -2.04
SS18-223ENST00000583595 NBDYA0A0U1RRE5 68 aa2.3□□□□□ -2.04
SS18-223ENST00000583595 CRIPTQ9P021 101 aa2.3□□□□□ -2.04
SS18-223ENST00000583595 A0A096LNI7 61 aa2.28□□□□□ -2.04
SS18-223ENST00000583595 NBEAL2Q6ZNJ1 2754 aa2.28□□□□□ -2.04
SS18-223ENST00000583595 KMT2CQ8NEZ4 4911 aaKnown RBP2.28□□□□□ -2.04
SS18-223ENST00000583595 RYR3Q15413 4870 aa2.28□□□□□ -2.04
SS18-223ENST00000583595 DEFB4AO15263 64 aa2.27□□□□□ -2.05
SS18-223ENST00000583595 KRTAP10-10P60014 251 aa2.27□□□□□ -2.05
SS18-223ENST00000583595 DEFB135Q30KP9 77 aa2.27□□□□□ -2.05
SS18-223ENST00000583595 COX6B2Q6YFQ2 88 aa2.27□□□□□ -2.05
SS18-223ENST00000583595 Q6ZRN7 208 aaPredicted RBP2.26□□□□□ -2.05
SS18-223ENST00000583595 DNAH3Q8TD57 4116 aa2.26□□□□□ -2.05
SS18-223ENST00000583595 TENM3Q9P273 2699 aa2.25□□□□□ -2.05
SS18-223ENST00000583595 DNAH9Q9NYC9 4486 aa2.25□□□□□ -2.05
SS18-223ENST00000583595 KRTAP13-1Q8IUC0 172 aa2.25□□□□□ -2.05
SS18-223ENST00000583595 SPINK1P00995 79 aa2.24□□□□□ -2.05
SS18-223ENST00000583595 RPL37P61927 97 aaKnown RBP2.24□□□□□ -2.05
SS18-223ENST00000583595 RYR2Q92736 4967 aa2.24□□□□□ -2.05
SS18-223ENST00000583595 BIRC6Q9NR09 4857 aa2.23□□□□□ -2.05
SS18-223ENST00000583595 DYNC2H1Q8NCM8 4307 aaKnown RBP2.23□□□□□ -2.05
SS18-223ENST00000583595 SPINK6Q6UWN8 80 aa2.22□□□□□ -2.05
SS18-223ENST00000583595 STAB2Q8WWQ8 2551 aa2.22□□□□□ -2.05
SS18-223ENST00000583595 EPPK1P58107 5090 aaKnown RBP2.21□□□□□ -2.06
SS18-223ENST00000583595 SACSQ9NZJ4 4579 aa2.21□□□□□ -2.06
SS18-223ENST00000583595 HUWE1Q7Z6Z7 4374 aaKnown RBP2.2□□□□□ -2.06
SS18-223ENST00000583595 C10orf95Q9H7T3 257 aa2.19□□□□□ -2.06
SS18-223ENST00000583595 DNAH1Q9P2D7 4330 aa2.19□□□□□ -2.06
SS18-223ENST00000583595 COL7A1Q02388 2944 aa2.18□□□□□ -2.06
SS18-223ENST00000583595 TENM2Q9NT68 2774 aa2.17□□□□□ -2.06
SS18-223ENST00000583595 PLECQ15149 4684 aaKnown RBP2.17□□□□□ -2.06
SS18-223ENST00000583595 DNAH7Q8WXX0 4024 aa2.17□□□□□ -2.06
SS18-223ENST00000583595 STARD9Q9P2P6 4700 aa2.17□□□□□ -2.06
SS18-223ENST00000583595 PLAC4Q8WY50 150 aa2.16□□□□□ -2.06
SS18-223ENST00000583595 KRTAP13-4Q3LI77 160 aa2.15□□□□□ -2.07
SS18-223ENST00000583595 HYDINQ4G0P3 5121 aa2.14□□□□□ -2.07
SS18-223ENST00000583595 HERC2O95714 4834 aa2.14□□□□□ -2.07
SS18-223ENST00000583595 KRTAP6-3Q3LI67 103 aa2.13□□□□□ -2.07
SS18-223ENST00000583595 LYSTQ99698 3801 aa2.13□□□□□ -2.07
SS18-223ENST00000583595 S4R3F8 94 aa2.13□□□□□ -2.07
SS18-223ENST00000583595 FLG2Q5D862 2391 aaPredicted RBP2.12□□□□□ -2.07
SS18-223ENST00000583595 DNAH10Q8IVF4 4471 aa2.11□□□□□ -2.07
SS18-223ENST00000583595 APLNQ9ULZ1 77 aa2.11□□□□□ -2.07
SS18-223ENST00000583595 PCLOQ9Y6V0 5065 aa2.11□□□□□ -2.07
SS18-223ENST00000583595 CSMD3Q7Z407 3707 aa2.11□□□□□ -2.07
SS18-223ENST00000583595 A0A0D9SG42 100 aa2.1□□□□□ -2.07
SS18-223ENST00000583595 KRTAP12-1P59990 96 aa2.1□□□□□ -2.07
SS18-223ENST00000583595 KIAA1109Q2LD37 5005 aa2.09□□□□□ -2.07
SS18-223ENST00000583595 DNAH11Q96DT5 4516 aa2.08□□□□□ -2.08
SS18-223ENST00000583595 HECTD4Q9Y4D8 3996 aa2.08□□□□□ -2.08
SS18-223ENST00000583595 UBE2DNLQ8IWF7 75 aa2.08□□□□□ -2.08
SS18-223ENST00000583595 VPS13DQ5THJ4 4388 aa2.07□□□□□ -2.08
SS18-223ENST00000583595 RYR1P21817 5038 aa2.07□□□□□ -2.08
SS18-223ENST00000583595 DYNC1H1Q14204 4646 aaKnown RBP2.07□□□□□ -2.08
SS18-223ENST00000583595 ABCA13Q86UQ4 5058 aa2.06□□□□□ -2.08
SS18-223ENST00000583595 DNAH6Q9C0G6 4158 aa2.06□□□□□ -2.08
SS18-223ENST00000583595 INE1O15225 51 aa2.05□□□□□ -2.08
SS18-223ENST00000583595 FRAS1Q86XX4 4008 aa2.05□□□□□ -2.08
SS18-223ENST00000583595 KMT2AQ03164 3969 aa2.05□□□□□ -2.08
SS18-223ENST00000583595 DNAH2Q9P225 4427 aa2.05□□□□□ -2.08
SS18-223ENST00000583595 DNAH17Q9UFH2 4485 aa2.04□□□□□ -2.08
SS18-223ENST00000583595 FAT2Q9NYQ8 4349 aa2.04□□□□□ -2.08
SS18-223ENST00000583595 MUC19Q7Z5P9 8384 aa2.01□□□□□ -2.09
SS18-223ENST00000583595 PKHD1P08F94 4074 aa2.01□□□□□ -2.09
SS18-223ENST00000583595 M0QZ58 72 aa2.01□□□□□ -2.09
SS18-223ENST00000583595 RPS29P62273 56 aaKnown RBP2.01□□□□□ -2.09
SS18-223ENST00000583595 KRTAP5-7Q6L8G8 165 aa2.01□□□□□ -2.09
SS18-223ENST00000583595 DNAH5Q8TE73 4624 aa2.01□□□□□ -2.09
SS18-223ENST00000583595 LRP1BQ9NZR2 4599 aa2.01□□□□□ -2.09
SS18-223ENST00000583595 HSPG2P98160 4391 aa2□□□□□ -2.09
SS18-223ENST00000583595 PKD1P98161 4303 aa2□□□□□ -2.09
SS18-223ENST00000583595 APOBP04114 4563 aaKnown RBP1.99□□□□□ -2.09
SS18-223ENST00000583595 HERC1Q15751 4861 aa1.97□□□□□ -2.09
SS18-223ENST00000583595 DMBT1Q9UGM3 2413 aaPredicted RBP1.96□□□□□ -2.1
SS18-223ENST00000583595 Q5VSD8 79 aa1.96□□□□□ -2.1
SS18-223ENST00000583595 FAT1Q14517 4588 aa1.95□□□□□ -2.1
SS18-223ENST00000583595 SMR3BP02814 79 aaPredicted RBP1.94□□□□□ -2.1
SS18-223ENST00000583595 MYCBP2O75592 4640 aa1.94□□□□□ -2.1
SS18-223ENST00000583595 KRTAP12-3P60328 96 aa1.93□□□□□ -2.1
SS18-223ENST00000583595 DNAH8Q96JB1 4490 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms