RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ZNF815PA8K554 130 aa2.32□□□□□ -2.04
VPS53-219ENST00000576019 LINC01590Q5TEZ4 76 aa2.32□□□□□ -2.04
VPS53-219ENST00000576019 FAM74A4Q5TZK3 123 aa2.32□□□□□ -2.04
VPS53-219ENST00000576019 KRTAP5-2Q701N4 177 aa2.32□□□□□ -2.04
VPS53-219ENST00000576019 V9GYH0 126 aa2.32□□□□□ -2.04
VPS53-219ENST00000576019 NCR3O14931 201 aa2.31□□□□□ -2.04
VPS53-219ENST00000576019 HTN1P15515 57 aa2.31□□□□□ -2.04
VPS53-219ENST00000576019 SPINK13Q1W4C9 94 aa2.31□□□□□ -2.04
VPS53-219ENST00000576019 PIGYQ3MUY2 71 aa2.31□□□□□ -2.04
VPS53-219ENST00000576019 KRTAP13-1Q8IUC0 172 aa2.31□□□□□ -2.04
VPS53-219ENST00000576019 PPP1R1CQ8WVI7 109 aa2.31□□□□□ -2.04
VPS53-219ENST00000576019 K7EIM0 57 aa2.3□□□□□ -2.04
VPS53-219ENST00000576019 PPP1R17O96001 155 aa2.3□□□□□ -2.04
VPS53-219ENST00000576019 PRCDQ00LT1 54 aa2.3□□□□□ -2.04
VPS53-219ENST00000576019 V9GYV3 84 aa2.3□□□□□ -2.04
VPS53-219ENST00000576019 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.29□□□□□ -2.04
VPS53-219ENST00000576019 COX8AP10176 69 aa2.29□□□□□ -2.04
VPS53-219ENST00000576019 SPAG11BQ08648 103 aa2.29□□□□□ -2.04
VPS53-219ENST00000576019 SPAG11AQ6PDA7 123 aa2.29□□□□□ -2.04
VPS53-219ENST00000576019 AMELXQ99217 191 aa2.29□□□□□ -2.04
VPS53-219ENST00000576019 KRTAP4-3Q9BYR4 195 aa2.29□□□□□ -2.04
VPS53-219ENST00000576019 ARL2-SNX15V9GYD0 113 aa2.29□□□□□ -2.04
VPS53-219ENST00000576019 CEBPZOSA8MTT3 80 aa2.28□□□□□ -2.04
VPS53-219ENST00000576019 TRBV30A0A0K0K1B3 111 aa2.27□□□□□ -2.05
VPS53-219ENST00000576019 ARMS2P0C7Q2 107 aa2.27□□□□□ -2.05
VPS53-219ENST00000576019 COX6A2Q02221 97 aa2.27□□□□□ -2.05
VPS53-219ENST00000576019 Q6JHZ5 121 aa2.27□□□□□ -2.05
VPS53-219ENST00000576019 C6orf201Q7Z4U5 140 aa2.27□□□□□ -2.05
VPS53-219ENST00000576019 GCHFRP30047 84 aa2.26□□□□□ -2.05
VPS53-219ENST00000576019 UBE2D4Q9Y2X8 147 aa2.26□□□□□ -2.05
VPS53-219ENST00000576019 TRGV1A0A0A0MS02 117 aa2.25□□□□□ -2.05
VPS53-219ENST00000576019 KRTAP12-3P60328 96 aa2.25□□□□□ -2.05
VPS53-219ENST00000576019 LINC01558Q9Y6Z2 57 aa2.25□□□□□ -2.05
VPS53-219ENST00000576019 R4GMQ9 66 aa2.25□□□□□ -2.05
VPS53-219ENST00000576019 F8VRH5 84 aa2.24□□□□□ -2.05
VPS53-219ENST00000576019 LEPROTL1O95214 131 aa2.24□□□□□ -2.05
VPS53-219ENST00000576019 C3orf79P0CE67 100 aa2.24□□□□□ -2.05
VPS53-219ENST00000576019 MT4P47944 62 aa2.24□□□□□ -2.05
VPS53-219ENST00000576019 PRR15LQ9BU68 103 aa2.24□□□□□ -2.05
VPS53-219ENST00000576019 A0A096LNI7 61 aa2.23□□□□□ -2.05
VPS53-219ENST00000576019 SPINK4O60575 86 aa2.23□□□□□ -2.05
VPS53-219ENST00000576019 ABRACLQ9P1F3 81 aa2.23□□□□□ -2.05
VPS53-219ENST00000576019 D6R8Y8 96 aa2.22□□□□□ -2.05
VPS53-219ENST00000576019 I3L2K1 104 aa2.22□□□□□ -2.05
VPS53-219ENST00000576019 IFI27P40305 119 aaPredicted RBP2.22□□□□□ -2.05
VPS53-219ENST00000576019 WT1-ASQ06250 92 aa2.22□□□□□ -2.05
VPS53-219ENST00000576019 ATP5EP2Q5VTU8 51 aa2.22□□□□□ -2.05
VPS53-219ENST00000576019 MUSTN1Q8IVN3 82 aa2.22□□□□□ -2.05
VPS53-219ENST00000576019 Q96NJ1 140 aa2.22□□□□□ -2.05
VPS53-219ENST00000576019 SNRPGP62308 76 aaKnown RBP2.21□□□□□ -2.06
VPS53-219ENST00000576019 TRBV7-4A0A0J9YYF1 115 aa2.2□□□□□ -2.06
VPS53-219ENST00000576019 UQCR11O14957 56 aa2.2□□□□□ -2.06
VPS53-219ENST00000576019 LINC00575Q6W349 94 aa2.2□□□□□ -2.06
VPS53-219ENST00000576019 BAGE2Q86Y30 109 aa2.2□□□□□ -2.06
VPS53-219ENST00000576019 M0R3E3 92 aa2.19□□□□□ -2.06
VPS53-219ENST00000576019 SPRR4Q96PI1 79 aa2.19□□□□□ -2.06
VPS53-219ENST00000576019 ENHOQ6UWT2 76 aa2.18□□□□□ -2.06
VPS53-219ENST00000576019 KRTAP5-5Q701N2 237 aaPredicted RBP2.18□□□□□ -2.06
VPS53-219ENST00000576019 TTTY10Q9BZA0 68 aa2.18□□□□□ -2.06
VPS53-219ENST00000576019 A0A087WVE0 104 aa2.17□□□□□ -2.06
VPS53-219ENST00000576019 FXYD6-FXYD2A0A087WZ82 144 aa2.17□□□□□ -2.06
VPS53-219ENST00000576019 PLAC4Q8WY50 150 aa2.17□□□□□ -2.06
VPS53-219ENST00000576019 MGPP08493 103 aa2.16□□□□□ -2.06
VPS53-219ENST00000576019 ACYP2P14621 99 aa2.16□□□□□ -2.06
VPS53-219ENST00000576019 BAGE3Q86Y29 109 aa2.16□□□□□ -2.06
VPS53-219ENST00000576019 CMC2Q9NRP2 79 aa2.16□□□□□ -2.06
VPS53-219ENST00000576019 TRAV1-2A0A0B4J238 106 aa2.15□□□□□ -2.07
VPS53-219ENST00000576019 CTXND1A0A1B0GTU2 59 aa2.15□□□□□ -2.07
VPS53-219ENST00000576019 H3BVH4 76 aa2.15□□□□□ -2.07
VPS53-219ENST00000576019 SPATA8Q6RVD6 105 aa2.14□□□□□ -2.07
VPS53-219ENST00000576019 LINC00472Q9H8W2 130 aa2.14□□□□□ -2.07
VPS53-219ENST00000576019 ATXN8Q156A1 80 aa2.13□□□□□ -2.07
VPS53-219ENST00000576019 A0A1B0GUT8 65 aa2.12□□□□□ -2.07
VPS53-219ENST00000576019 SNRPGP15A8MWD9 76 aa2.12□□□□□ -2.07
VPS53-219ENST00000576019 SPINK7P58062 85 aa2.12□□□□□ -2.07
VPS53-219ENST00000576019 KRTAP12-4P60329 112 aa2.12□□□□□ -2.07
VPS53-219ENST00000576019 GNG13Q9P2W3 67 aa2.12□□□□□ -2.07
VPS53-219ENST00000576019 COX17Q14061 63 aa2.11□□□□□ -2.07
VPS53-219ENST00000576019 KRTAP8-1Q8IUC2 63 aa2.11□□□□□ -2.07
VPS53-219ENST00000576019 DEFB107AQ8IZN7 70 aa2.11□□□□□ -2.07
VPS53-219ENST00000576019 H0Y9P7 68 aa2.1□□□□□ -2.07
VPS53-219ENST00000576019 SMIM4Q8WVI0 70 aa2.1□□□□□ -2.07
VPS53-219ENST00000576019 FXYD6Q9H0Q3 95 aa2.08□□□□□ -2.08
VPS53-219ENST00000576019 NDUFB1O75438 58 aa2.07□□□□□ -2.08
VPS53-219ENST00000576019 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.07□□□□□ -2.08
VPS53-219ENST00000576019 GVQW2A0A096LPI5 108 aaPredicted RBP2.06□□□□□ -2.08
VPS53-219ENST00000576019 TRAV21A0A0B4J279 112 aa2.06□□□□□ -2.08
VPS53-219ENST00000576019 ANGP03950 147 aaKnown RBP2.06□□□□□ -2.08
VPS53-219ENST00000576019 RPL37P61927 97 aaKnown RBP2.06□□□□□ -2.08
VPS53-219ENST00000576019 C10orf113Q5VZT2 155 aa2.06□□□□□ -2.08
VPS53-219ENST00000576019 LINC01549A6NIU2 74 aa2.05□□□□□ -2.08
VPS53-219ENST00000576019 MT1BP07438 61 aa2.05□□□□□ -2.08
VPS53-219ENST00000576019 LCE1CQ5T751 118 aa2.05□□□□□ -2.08
VPS53-219ENST00000576019 LCE1BQ5T7P3 118 aa2.05□□□□□ -2.08
VPS53-219ENST00000576019 Q6ZRX8 168 aa2.05□□□□□ -2.08
VPS53-219ENST00000576019 NREPQ16612 68 aa2.04□□□□□ -2.08
VPS53-219ENST00000576019 SMIM11BQ8TCY0 68 aa2.04□□□□□ -2.08
VPS53-219ENST00000576019 KRTAP5-8O75690 187 aa2.03□□□□□ -2.08
VPS53-219ENST00000576019 CLPSL2Q6UWE3 100 aa2.03□□□□□ -2.08
VPS53-219ENST00000576019 LINC00959A0A1B0GUT2 108 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms