RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 ALMS1Q8TCU4 4167 aa5.52□□□□□ -1.53
CHD4-211ENST00000544484 KRTAP12-3P60328 96 aa5.49□□□□□ -1.53
CHD4-211ENST00000544484 AKAP9Q99996 3911 aa5.49□□□□□ -1.53
CHD4-211ENST00000544484 LCE3AQ5TA76 89 aa5.47□□□□□ -1.53
CHD4-211ENST00000544484 DNHD1Q96M86 4753 aa5.47□□□□□ -1.53
CHD4-211ENST00000544484 PLECQ15149 4684 aaKnown RBP5.46□□□□□ -1.54
CHD4-211ENST00000544484 DNAH1Q9P2D7 4330 aa5.45□□□□□ -1.54
CHD4-211ENST00000544484 DNAH11Q96DT5 4516 aa5.45□□□□□ -1.54
CHD4-211ENST00000544484 KRTAP4-1Q9BYQ7 146 aa5.38□□□□□ -1.55
CHD4-211ENST00000544484 DNAH10Q8IVF4 4471 aa5.38□□□□□ -1.55
CHD4-211ENST00000544484 FAT1Q14517 4588 aa5.31□□□□□ -1.56
CHD4-211ENST00000544484 INE1O15225 51 aa5.29□□□□□ -1.56
CHD4-211ENST00000544484 KRTAP23-1A1A580 65 aa5.28□□□□□ -1.56
CHD4-211ENST00000544484 DYNC1H1Q14204 4646 aaKnown RBP5.28□□□□□ -1.56
CHD4-211ENST00000544484 VPS13DQ5THJ4 4388 aa5.26□□□□□ -1.57
CHD4-211ENST00000544484 RYR1P21817 5038 aa5.25□□□□□ -1.57
CHD4-211ENST00000544484 LRP1BQ9NZR2 4599 aa5.24□□□□□ -1.57
CHD4-211ENST00000544484 KRTAP8-1Q8IUC2 63 aa5.24□□□□□ -1.57
CHD4-211ENST00000544484 DNAH17Q9UFH2 4485 aa5.24□□□□□ -1.57
CHD4-211ENST00000544484 MT1HP80294 61 aa5.23□□□□□ -1.57
CHD4-211ENST00000544484 DNAH2Q9P225 4427 aa5.23□□□□□ -1.57
CHD4-211ENST00000544484 STARD9Q9P2P6 4700 aa5.22□□□□□ -1.57
CHD4-211ENST00000544484 DNAH8Q96JB1 4490 aa5.21□□□□□ -1.58
CHD4-211ENST00000544484 MT2AP02795 61 aa5.16□□□□□ -1.58
CHD4-211ENST00000544484 SACSQ9NZJ4 4579 aa5.14□□□□□ -1.59
CHD4-211ENST00000544484 KRTAP10-5P60370 271 aa5.13□□□□□ -1.59
CHD4-211ENST00000544484 FAT2Q9NYQ8 4349 aa5.09□□□□□ -1.59
CHD4-211ENST00000544484 PRKDCP78527 4128 aaKnown RBP5.09□□□□□ -1.59
CHD4-211ENST00000544484 MT1FP04733 61 aa5.08□□□□□ -1.6
CHD4-211ENST00000544484 KMT2AQ03164 3969 aa5.07□□□□□ -1.6
CHD4-211ENST00000544484 SPRR2GQ9BYE4 73 aa5.06□□□□□ -1.6
CHD4-211ENST00000544484 ANK2Q01484 3957 aa5.06□□□□□ -1.6
CHD4-211ENST00000544484 DYNC2H1Q8NCM8 4307 aaKnown RBP5.05□□□□□ -1.6
CHD4-211ENST00000544484 VPS13BQ7Z7G8 4022 aa5.04□□□□□ -1.6
CHD4-211ENST00000544484 LYSTQ99698 3801 aa5.03□□□□□ -1.6
CHD4-211ENST00000544484 APOBP04114 4563 aaKnown RBP5.03□□□□□ -1.6
CHD4-211ENST00000544484 DNAH3Q8TD57 4116 aa5.02□□□□□ -1.61
CHD4-211ENST00000544484 MYCBP2O75592 4640 aa5.01□□□□□ -1.61
CHD4-211ENST00000544484 KIAA1109Q2LD37 5005 aa4.96□□□□□ -1.62
CHD4-211ENST00000544484 KRTAP17-1Q9BYP8 105 aa4.94□□□□□ -1.62
CHD4-211ENST00000544484 KRTAP19-5Q3LI72 72 aa4.93□□□□□ -1.62
CHD4-211ENST00000544484 RYR3Q15413 4870 aa4.92□□□□□ -1.62
CHD4-211ENST00000544484 SPRR2FQ96RM1 72 aa4.92□□□□□ -1.62
CHD4-211ENST00000544484 FRAS1Q86XX4 4008 aa4.89□□□□□ -1.63
CHD4-211ENST00000544484 FAT3Q8TDW7 4589 aa4.87□□□□□ -1.63
CHD4-211ENST00000544484 LRP1Q07954 4544 aaKnown RBP4.85□□□□□ -1.63
CHD4-211ENST00000544484 KRTAP10-7P60409 375 aaPredicted RBP4.8□□□□□ -1.64
CHD4-211ENST00000544484 LCE3CQ5T5A8 94 aa4.79□□□□□ -1.64
CHD4-211ENST00000544484 KRTAP19-1Q8IUB9 90 aa4.78□□□□□ -1.64
CHD4-211ENST00000544484 DNAH6Q9C0G6 4158 aa4.76□□□□□ -1.65
CHD4-211ENST00000544484 CMYA5Q8N3K9 4069 aa4.73□□□□□ -1.65
CHD4-211ENST00000544484 DNAH7Q8WXX0 4024 aa4.7□□□□□ -1.66
CHD4-211ENST00000544484 KRTAP19-8Q3LI54 63 aa4.69□□□□□ -1.66
CHD4-211ENST00000544484 RYR2Q92736 4967 aa4.69□□□□□ -1.66
CHD4-211ENST00000544484 HERC2O95714 4834 aa4.66□□□□□ -1.66
CHD4-211ENST00000544484 LRP2P98164 4655 aa4.66□□□□□ -1.66
CHD4-211ENST00000544484 HECTD4Q9Y4D8 3996 aa4.65□□□□□ -1.66
CHD4-211ENST00000544484 MT1XP80297 61 aa4.64□□□□□ -1.67
CHD4-211ENST00000544484 MT1BP07438 61 aa4.61□□□□□ -1.67
CHD4-211ENST00000544484 KRTAP9-8Q9BYQ0 159 aa4.61□□□□□ -1.67
CHD4-211ENST00000544484 HYDINQ4G0P3 5121 aa4.59□□□□□ -1.68
CHD4-211ENST00000544484 SPRR2EP22531 72 aa4.58□□□□□ -1.68
CHD4-211ENST00000544484 SPRR2BP35325 72 aa4.58□□□□□ -1.68
CHD4-211ENST00000544484 SPRR2AP35326 72 aa4.58□□□□□ -1.68
CHD4-211ENST00000544484 KRTAP4-8A0A0G2JLE6 195 aa4.56□□□□□ -1.68
CHD4-211ENST00000544484 KRTAP4-8Q9BYQ9 185 aa4.56□□□□□ -1.68
CHD4-211ENST00000544484 HSPG2P98160 4391 aa4.54□□□□□ -1.68
CHD4-211ENST00000544484 LCE2CQ5TA81 110 aa4.54□□□□□ -1.68
CHD4-211ENST00000544484 PCLOQ9Y6V0 5065 aa4.53□□□□□ -1.68
CHD4-211ENST00000544484 PKD1P98161 4303 aa4.51□□□□□ -1.69
CHD4-211ENST00000544484 PKHD1P08F94 4074 aa4.51□□□□□ -1.69
CHD4-211ENST00000544484 LCE3BQ5TA77 95 aa4.51□□□□□ -1.69
CHD4-211ENST00000544484 MT1GP13640 62 aa4.51□□□□□ -1.69
CHD4-211ENST00000544484 LPAP08519 4548 aa4.5□□□□□ -1.69
CHD4-211ENST00000544484 KRTAP19-4Q3LI73 84 aa4.5□□□□□ -1.69
CHD4-211ENST00000544484 KRTAP9-3Q9BYQ3 159 aa4.49□□□□□ -1.69
CHD4-211ENST00000544484 BIRC6Q9NR09 4857 aa4.48□□□□□ -1.69
CHD4-211ENST00000544484 HERC1Q15751 4861 aa4.44□□□□□ -1.7
CHD4-211ENST00000544484 SPRR2DP22532 72 aa4.41□□□□□ -1.7
CHD4-211ENST00000544484 LCE2BO14633 110 aa4.39□□□□□ -1.71
CHD4-211ENST00000544484 KMT2CQ8NEZ4 4911 aaKnown RBP4.38□□□□□ -1.71
CHD4-211ENST00000544484 KRTAP12-4P60329 112 aa4.34□□□□□ -1.71
CHD4-211ENST00000544484 EPPK1P58107 5090 aaKnown RBP4.31□□□□□ -1.72
CHD4-211ENST00000544484 KRTAP19-2Q3LHN2 52 aa4.31□□□□□ -1.72
CHD4-211ENST00000544484 PKHD1L1Q86WI1 4243 aa4.31□□□□□ -1.72
CHD4-211ENST00000544484 KRTAP4-7Q9BYR0 210 aa4.3□□□□□ -1.72
CHD4-211ENST00000544484 SPRR5A0A1B0GTR4 108 aa4.26□□□□□ -1.73
CHD4-211ENST00000544484 ABCA13Q86UQ4 5058 aa4.23□□□□□ -1.73
CHD4-211ENST00000544484 KRTAP19-3Q7Z4W3 81 aa4.22□□□□□ -1.73
CHD4-211ENST00000544484 TNXBP22105 4242 aa4.21□□□□□ -1.74
CHD4-211ENST00000544484 MUC17Q685J3 4493 aa4.2□□□□□ -1.74
CHD4-211ENST00000544484 MT1LQ93083 61 aa4.19□□□□□ -1.74
CHD4-211ENST00000544484 FSIP2Q5CZC0 6907 aa4.19□□□□□ -1.74
CHD4-211ENST00000544484 LCE3DQ9BYE3 92 aa4.19□□□□□ -1.74
CHD4-211ENST00000544484 MT1EP04732 61 aa4.17□□□□□ -1.74
CHD4-211ENST00000544484 SYNE1Q8NF91 8797 aaKnown RBP4.16□□□□□ -1.74
CHD4-211ENST00000544484 FLGP20930 4061 aaPredicted RBP4.15□□□□□ -1.74
CHD4-211ENST00000544484 LCE3EQ5T5B0 92 aa4.1□□□□□ -1.75
CHD4-211ENST00000544484 UBR4Q5T4S7 5183 aa4.09□□□□□ -1.75
CHD4-211ENST00000544484 LCE2DQ5TA82 110 aaPredicted RBP4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms