RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 RPS29P62273 56 aaKnown RBP3□□□□□ -1.93
XRCC4-206ENST00000542685 PLAC4Q8WY50 150 aa3□□□□□ -1.93
XRCC4-206ENST00000542685 DNAH3Q8TD57 4116 aa3□□□□□ -1.93
XRCC4-206ENST00000542685 VWFP04275 2813 aa2.99□□□□□ -1.93
XRCC4-206ENST00000542685 ANK2Q01484 3957 aa2.99□□□□□ -1.93
XRCC4-206ENST00000542685 NSD1Q96L73 2696 aaPredicted RBP2.99□□□□□ -1.93
XRCC4-206ENST00000542685 SETD2Q9BYW2 2564 aaPredicted RBP2.98□□□□□ -1.93
XRCC4-206ENST00000542685 PRO2289Q9P1D8 64 aa2.97□□□□□ -1.93
XRCC4-206ENST00000542685 CENPEQ02224 2701 aa2.97□□□□□ -1.93
XRCC4-206ENST00000542685 TENM3Q9P273 2699 aa2.96□□□□□ -1.93
XRCC4-206ENST00000542685 TEP1Q99973 2627 aaKnown RBP2.96□□□□□ -1.94
XRCC4-206ENST00000542685 C10orf95Q9H7T3 257 aa2.95□□□□□ -1.94
XRCC4-206ENST00000542685 S4R3F8 94 aa2.94□□□□□ -1.94
XRCC4-206ENST00000542685 TRRAPQ9Y4A5 3859 aa2.93□□□□□ -1.94
XRCC4-206ENST00000542685 F8P00451 2351 aa2.93□□□□□ -1.94
XRCC4-206ENST00000542685 KRTAP13-2Q52LG2 175 aa2.93□□□□□ -1.94
XRCC4-206ENST00000542685 TENM4Q6N022 2769 aa2.93□□□□□ -1.94
XRCC4-206ENST00000542685 PKD1L1Q8TDX9 2849 aa2.92□□□□□ -1.94
XRCC4-206ENST00000542685 TENM1Q9UKZ4 2725 aa2.91□□□□□ -1.94
XRCC4-206ENST00000542685 FLG2Q5D862 2391 aaPredicted RBP2.91□□□□□ -1.94
XRCC4-206ENST00000542685 HUWE1Q7Z6Z7 4374 aaKnown RBP2.91□□□□□ -1.94
XRCC4-206ENST00000542685 DYNC2H1Q8NCM8 4307 aaKnown RBP2.89□□□□□ -1.95
XRCC4-206ENST00000542685 ATRQ13535 2644 aa2.89□□□□□ -1.95
XRCC4-206ENST00000542685 DNAH9Q9NYC9 4486 aa2.89□□□□□ -1.95
XRCC4-206ENST00000542685 FASNP49327 2511 aaKnown RBP2.89□□□□□ -1.95
XRCC4-206ENST00000542685 ITPR2Q14571 2701 aa2.89□□□□□ -1.95
XRCC4-206ENST00000542685 MAST4O15021 2626 aa2.88□□□□□ -1.95
XRCC4-206ENST00000542685 INE1O15225 51 aa2.88□□□□□ -1.95
XRCC4-206ENST00000542685 CMYA5Q8N3K9 4069 aa2.87□□□□□ -1.95
XRCC4-206ENST00000542685 HECTD1Q9ULT8 2610 aa2.87□□□□□ -1.95
XRCC4-206ENST00000542685 LYSTQ99698 3801 aa2.86□□□□□ -1.95
XRCC4-206ENST00000542685 FBN1P35555 2871 aaKnown RBP2.86□□□□□ -1.95
XRCC4-206ENST00000542685 VPS13DQ5THJ4 4388 aa2.85□□□□□ -1.95
XRCC4-206ENST00000542685 DNAH10Q8IVF4 4471 aa2.85□□□□□ -1.95
XRCC4-206ENST00000542685 M0QZ58 72 aa2.84□□□□□ -1.95
XRCC4-206ENST00000542685 KRTAP13-4Q3LI77 160 aa2.84□□□□□ -1.95
XRCC4-206ENST00000542685 A0A0D9SG42 100 aa2.83□□□□□ -1.96
XRCC4-206ENST00000542685 KRTAP12-1P59990 96 aa2.83□□□□□ -1.96
XRCC4-206ENST00000542685 HELZ2Q9BYK8 2649 aaKnown RBP2.82□□□□□ -1.96
XRCC4-206ENST00000542685 KRTAP10-10P60014 251 aa2.82□□□□□ -1.96
XRCC4-206ENST00000542685 FLNBO75369 2602 aaKnown RBP2.82□□□□□ -1.96
XRCC4-206ENST00000542685 BAHCC1Q9P281 2608 aa2.82□□□□□ -1.96
XRCC4-206ENST00000542685 PRKDCP78527 4128 aaKnown RBP2.81□□□□□ -1.96
XRCC4-206ENST00000542685 SRRM2Q9UQ35 2752 aaKnown RBP2.81□□□□□ -1.96
XRCC4-206ENST00000542685 DNAH8Q96JB1 4490 aa2.81□□□□□ -1.96
XRCC4-206ENST00000542685 CSMD3Q7Z407 3707 aa2.8□□□□□ -1.96
XRCC4-206ENST00000542685 DNAH7Q8WXX0 4024 aa2.78□□□□□ -1.96
XRCC4-206ENST00000542685 FRAS1Q86XX4 4008 aa2.78□□□□□ -1.96
XRCC4-206ENST00000542685 DNAH17Q9UFH2 4485 aa2.78□□□□□ -1.96
XRCC4-206ENST00000542685 SPRR5A0A1B0GTR4 108 aa2.77□□□□□ -1.97
XRCC4-206ENST00000542685 MEGF8Q7Z7M0 2845 aa2.76□□□□□ -1.97
XRCC4-206ENST00000542685 R4GN34 69 aa2.76□□□□□ -1.97
XRCC4-206ENST00000542685 DNAH6Q9C0G6 4158 aa2.76□□□□□ -1.97
XRCC4-206ENST00000542685 HECTD4Q9Y4D8 3996 aa2.75□□□□□ -1.97
XRCC4-206ENST00000542685 NBEAL1Q6ZS30 2694 aa2.75□□□□□ -1.97
XRCC4-206ENST00000542685 STAB2Q8WWQ8 2551 aa2.74□□□□□ -1.97
XRCC4-206ENST00000542685 KRTAP5-8O75690 187 aa2.74□□□□□ -1.97
XRCC4-206ENST00000542685 COL6A5A8TX70 2615 aa2.72□□□□□ -1.97
XRCC4-206ENST00000542685 COL7A1Q02388 2944 aa2.72□□□□□ -1.97
XRCC4-206ENST00000542685 STAB1Q9NY15 2570 aa2.72□□□□□ -1.97
XRCC4-206ENST00000542685 PLECQ15149 4684 aaKnown RBP2.72□□□□□ -1.97
XRCC4-206ENST00000542685 STARD9Q9P2P6 4700 aa2.71□□□□□ -1.98
XRCC4-206ENST00000542685 FBN3Q75N90 2809 aa2.71□□□□□ -1.98
XRCC4-206ENST00000542685 NOTCH1P46531 2555 aa2.7□□□□□ -1.98
XRCC4-206ENST00000542685 KRTAP10-4P60372 401 aaPredicted RBP2.69□□□□□ -1.98
XRCC4-206ENST00000542685 DNAH11Q96DT5 4516 aa2.68□□□□□ -1.98
XRCC4-206ENST00000542685 TGP01266 2768 aa2.67□□□□□ -1.98
XRCC4-206ENST00000542685 DNAH2Q9P225 4427 aa2.67□□□□□ -1.98
XRCC4-206ENST00000542685 C9orf92A6NGG3 77 aa2.67□□□□□ -1.98
XRCC4-206ENST00000542685 KRTAP5-7Q6L8G8 165 aa2.67□□□□□ -1.98
XRCC4-206ENST00000542685 Q5VSD8 79 aa2.66□□□□□ -1.98
XRCC4-206ENST00000542685 MUC19Q7Z5P9 8384 aa2.66□□□□□ -1.98
XRCC4-206ENST00000542685 SACSQ9NZJ4 4579 aa2.66□□□□□ -1.98
XRCC4-206ENST00000542685 KMT2AQ03164 3969 aa2.65□□□□□ -1.98
XRCC4-206ENST00000542685 DNAH5Q8TE73 4624 aa2.64□□□□□ -1.99
XRCC4-206ENST00000542685 MGAM2Q2M2H8 2515 aa2.64□□□□□ -1.99
XRCC4-206ENST00000542685 PKHD1L1Q86WI1 4243 aa2.62□□□□□ -1.99
XRCC4-206ENST00000542685 PKHD1P08F94 4074 aa2.6□□□□□ -1.99
XRCC4-206ENST00000542685 VPS13BQ7Z7G8 4022 aa2.59□□□□□ -1.99
XRCC4-206ENST00000542685 PKD1P98161 4303 aa2.59□□□□□ -1.99
XRCC4-206ENST00000542685 LRP1BQ9NZR2 4599 aa2.58□□□□□ -2
XRCC4-206ENST00000542685 FAT2Q9NYQ8 4349 aa2.55□□□□□ -2
XRCC4-206ENST00000542685 DMBT1Q9UGM3 2413 aaPredicted RBP2.52□□□□□ -2.01
XRCC4-206ENST00000542685 APOBP04114 4563 aaKnown RBP2.52□□□□□ -2.01
XRCC4-206ENST00000542685 TNP1P09430 55 aa2.52□□□□□ -2.01
XRCC4-206ENST00000542685 KRTAP21-3Q3LHN1 58 aa2.52□□□□□ -2.01
XRCC4-206ENST00000542685 SMR3BP02814 79 aaPredicted RBP2.51□□□□□ -2.01
XRCC4-206ENST00000542685 TNXBP22105 4242 aa2.5□□□□□ -2.01
XRCC4-206ENST00000542685 LRP1Q07954 4544 aaKnown RBP2.45□□□□□ -2.02
XRCC4-206ENST00000542685 MT1HL1P0DM35 61 aa2.44□□□□□ -2.02
XRCC4-206ENST00000542685 MYCBP2O75592 4640 aa2.43□□□□□ -2.02
XRCC4-206ENST00000542685 HYDINQ4G0P3 5121 aa2.42□□□□□ -2.02
XRCC4-206ENST00000542685 FAT3Q8TDW7 4589 aa2.41□□□□□ -2.02
XRCC4-206ENST00000542685 HSPG2P98160 4391 aa2.41□□□□□ -2.02
XRCC4-206ENST00000542685 FAT1Q14517 4588 aa2.4□□□□□ -2.03
XRCC4-206ENST00000542685 DYNC1H1Q14204 4646 aaKnown RBP2.4□□□□□ -2.03
XRCC4-206ENST00000542685 DNHD1Q96M86 4753 aa2.37□□□□□ -2.03
XRCC4-206ENST00000542685 KRTAP19-2Q3LHN2 52 aa2.33□□□□□ -2.04
XRCC4-206ENST00000542685 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
XRCC4-206ENST00000542685 FLGP20930 4061 aaPredicted RBP2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 1066.6 ms