RNA–Protein interactions for RNA: ENST00000542133.5

NPIPB4-215, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 3

Gene NPIPB4, Length 910 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-215	ENST00000542133	SPATA8	Q6RVD6	105 aa		4.38	□□□□□ -1.71
NPIPB4-215	ENST00000542133	LINC00959	A0A1B0GUT2	108 aa		4.37	□□□□□ -1.71
NPIPB4-215	ENST00000542133		Q5W150	140 aa		4.37	□□□□□ -1.71
NPIPB4-215	ENST00000542133	SPRR4	Q96PI1	79 aa		4.37	□□□□□ -1.71
NPIPB4-215	ENST00000542133	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	4.36	□□□□□ -1.71
NPIPB4-215	ENST00000542133	IGKV2-29	A2NJV5	120 aa	Predicted RBP	4.36	□□□□□ -1.71
NPIPB4-215	ENST00000542133	ZNF861P	O60384	105 aa		4.36	□□□□□ -1.71
NPIPB4-215	ENST00000542133	SPINK7	P58062	85 aa		4.36	□□□□□ -1.71
NPIPB4-215	ENST00000542133	KRTAP10-6	P60371	365 aa	Predicted RBP	4.36	□□□□□ -1.71
NPIPB4-215	ENST00000542133	KRTAP19-2	Q3LHN2	52 aa		4.36	□□□□□ -1.71
NPIPB4-215	ENST00000542133	KRTAP7-1	Q8IUC3	87 aa		4.36	□□□□□ -1.71
NPIPB4-215	ENST00000542133	ZNF625	Q96I27	306 aa	Predicted RBP	4.36	□□□□□ -1.71
NPIPB4-215	ENST00000542133	LOC110117498	A0A087WWA1	95 aa		4.35	□□□□□ -1.71
NPIPB4-215	ENST00000542133	LINC00304	Q8N9R0	145 aa		4.35	□□□□□ -1.71
NPIPB4-215	ENST00000542133	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.34	□□□□□ -1.71
NPIPB4-215	ENST00000542133	KRTAP13-2	Q52LG2	175 aa		4.34	□□□□□ -1.71
NPIPB4-215	ENST00000542133	MACF1	Q9UPN3	7388 aa	Known RBP	4.34	□□□□□ -1.71
NPIPB4-215	ENST00000542133	KRTAP13-3	Q3SY46	172 aa		4.33	□□□□□ -1.72
NPIPB4-215	ENST00000542133	LITAF	Q99732	161 aa		4.32	□□□□□ -1.72
NPIPB4-215	ENST00000542133	ANAPC11	Q9NYG5	84 aa		4.31	□□□□□ -1.72
NPIPB4-215	ENST00000542133	C9orf129	Q5T035	196 aa	Known RBP	4.3	□□□□□ -1.72
NPIPB4-215	ENST00000542133	CNFN	Q9BYD5	112 aa		4.3	□□□□□ -1.72
NPIPB4-215	ENST00000542133	FLG	P20930	4061 aa	Predicted RBP	4.29	□□□□□ -1.72
NPIPB4-215	ENST00000542133	ST20-AS1	Q8NBB2	130 aa		4.28	□□□□□ -1.72
NPIPB4-215	ENST00000542133	RPL39L	Q96EH5	51 aa	Known RBP	4.28	□□□□□ -1.72
NPIPB4-215	ENST00000542133	C6orf48	Q9UBA6	75 aa		4.28	□□□□□ -1.72
NPIPB4-215	ENST00000542133	ETDC	A0A1B0GVM5	59 aa		4.27	□□□□□ -1.73
NPIPB4-215	ENST00000542133	NDUFA1	O15239	70 aa		4.27	□□□□□ -1.73
NPIPB4-215	ENST00000542133	KCNQ1DN	Q9H478	68 aa		4.27	□□□□□ -1.73
NPIPB4-215	ENST00000542133	DEFB116	Q30KQ4	102 aa		4.26	□□□□□ -1.73
NPIPB4-215	ENST00000542133	UNQ6190/PRO20217	Q6UXQ8	127 aa		4.26	□□□□□ -1.73
NPIPB4-215	ENST00000542133	COA5	Q86WW8	74 aa		4.26	□□□□□ -1.73
NPIPB4-215	ENST00000542133	SMIM2	Q9BVW6	85 aa		4.26	□□□□□ -1.73
NPIPB4-215	ENST00000542133	NCR3	O14931	201 aa		4.24	□□□□□ -1.73
NPIPB4-215	ENST00000542133		M0R2T5	61 aa		4.23	□□□□□ -1.73
NPIPB4-215	ENST00000542133	IGKV4-1	P06312	121 aa		4.23	□□□□□ -1.73
NPIPB4-215	ENST00000542133	COX17	Q14061	63 aa		4.23	□□□□□ -1.73
NPIPB4-215	ENST00000542133	KRTAP13-1	Q8IUC0	172 aa		4.23	□□□□□ -1.73
NPIPB4-215	ENST00000542133	SPINT4	Q6UDR6	99 aa		4.2	□□□□□ -1.74
NPIPB4-215	ENST00000542133	LINC00308	Q8TCZ7	52 aa		4.2	□□□□□ -1.74
NPIPB4-215	ENST00000542133	PRO2289	Q9P1D8	64 aa		4.2	□□□□□ -1.74
NPIPB4-215	ENST00000542133	NEB	P20929	6669 aa		4.19	□□□□□ -1.74
NPIPB4-215	ENST00000542133	POLR2K	P53803	58 aa	Known RBP	4.18	□□□□□ -1.74
NPIPB4-215	ENST00000542133	LINC00472	Q9H8W2	130 aa		4.18	□□□□□ -1.74
NPIPB4-215	ENST00000542133	COX7B	P24311	80 aa		4.17	□□□□□ -1.74
NPIPB4-215	ENST00000542133	PRLH	P81277	87 aa		4.15	□□□□□ -1.75
NPIPB4-215	ENST00000542133	PCOTH	Q58A44	107 aa		4.15	□□□□□ -1.75
NPIPB4-215	ENST00000542133		A0A1B0GU69	56 aa		4.12	□□□□□ -1.75
NPIPB4-215	ENST00000542133	SPINK1	P00995	79 aa		4.12	□□□□□ -1.75
NPIPB4-215	ENST00000542133	COX6B2	Q6YFQ2	88 aa		4.12	□□□□□ -1.75
NPIPB4-215	ENST00000542133	RPL39	P62891	51 aa	Known RBP	4.11	□□□□□ -1.75
NPIPB4-215	ENST00000542133	IGKV2-28	A0A075B6P5	120 aa		4.1	□□□□□ -1.75
NPIPB4-215	ENST00000542133	IGKV2D-28	P01615	120 aa		4.1	□□□□□ -1.75
NPIPB4-215	ENST00000542133		Q96NJ1	140 aa		4.1	□□□□□ -1.75
NPIPB4-215	ENST00000542133	RPS29	P62273	56 aa	Known RBP	4.09	□□□□□ -1.75
NPIPB4-215	ENST00000542133	SMIM11B	Q8TCY0	68 aa		4.09	□□□□□ -1.75
NPIPB4-215	ENST00000542133	TOMM7	Q9P0U1	55 aa		4.09	□□□□□ -1.75
NPIPB4-215	ENST00000542133		Q8IZM0	81 aa		4.08	□□□□□ -1.76
NPIPB4-215	ENST00000542133	LINC00158	P58513	81 aa		4.07	□□□□□ -1.76
NPIPB4-215	ENST00000542133		R4GN34	69 aa		4.07	□□□□□ -1.76
NPIPB4-215	ENST00000542133	KRTAP6-3	Q3LI67	103 aa		4.06	□□□□□ -1.76
NPIPB4-215	ENST00000542133		A0A0G2JQZ4	141 aa		4.04	□□□□□ -1.76
NPIPB4-215	ENST00000542133	C9orf92	A6NGG3	77 aa		4.03	□□□□□ -1.76
NPIPB4-215	ENST00000542133		Q6ZQY7	126 aa		4.02	□□□□□ -1.77
NPIPB4-215	ENST00000542133	MUC12	Q9UKN1	5478 aa		4.02	□□□□□ -1.77
NPIPB4-215	ENST00000542133	IGLV6-57	P01721	117 aa		3.99	□□□□□ -1.77
NPIPB4-215	ENST00000542133	ACYP2	P14621	99 aa		3.99	□□□□□ -1.77
NPIPB4-215	ENST00000542133	CDKN2A-AS1	Q9UH64	79 aa		3.99	□□□□□ -1.77
NPIPB4-215	ENST00000542133	MT2A	P02795	61 aa		3.98	□□□□□ -1.77
NPIPB4-215	ENST00000542133	KRTAP19-6	Q3LI70	58 aa		3.98	□□□□□ -1.77
NPIPB4-215	ENST00000542133	SSBP3-AS1	Q7Z2R9	100 aa		3.98	□□□□□ -1.77
NPIPB4-215	ENST00000542133	RPL37	P61927	97 aa	Known RBP	3.97	□□□□□ -1.77
NPIPB4-215	ENST00000542133	KRTAP20-1	Q3LI63	56 aa		3.97	□□□□□ -1.77
NPIPB4-215	ENST00000542133		Q8N9L7	120 aa		3.97	□□□□□ -1.77
NPIPB4-215	ENST00000542133	HRES1	P13985	223 aa		3.96	□□□□□ -1.78
NPIPB4-215	ENST00000542133	MT1F	P04733	61 aa		3.95	□□□□□ -1.78
NPIPB4-215	ENST00000542133	LINC00575	Q6W349	94 aa		3.95	□□□□□ -1.78
NPIPB4-215	ENST00000542133	SPRR1A	P35321	89 aa		3.92	□□□□□ -1.78
NPIPB4-215	ENST00000542133	INE1	O15225	51 aa		3.91	□□□□□ -1.78
NPIPB4-215	ENST00000542133	KRTAP10-10	P60014	251 aa		3.87	□□□□□ -1.79
NPIPB4-215	ENST00000542133	TP53AIP1	Q9HCN2	124 aa		3.86	□□□□□ -1.79
NPIPB4-215	ENST00000542133	MDN1	Q9NU22	5596 aa		3.85	□□□□□ -1.79
NPIPB4-215	ENST00000542133	DSCR10	P59022	87 aa		3.84	□□□□□ -1.79
NPIPB4-215	ENST00000542133		Q6ZRX8	168 aa		3.84	□□□□□ -1.79
NPIPB4-215	ENST00000542133	PLAC4	Q8WY50	150 aa		3.82	□□□□□ -1.8
NPIPB4-215	ENST00000542133	IGKV2-30	P06310	120 aa		3.81	□□□□□ -1.8
NPIPB4-215	ENST00000542133	LCE1A	Q5T7P2	110 aa		3.81	□□□□□ -1.8
NPIPB4-215	ENST00000542133	KMT2D	O14686	5537 aa		3.79	□□□□□ -1.8
NPIPB4-215	ENST00000542133	IGLV5-48	A0A075B6I7	105 aa		3.78	□□□□□ -1.8
NPIPB4-215	ENST00000542133	SPRR1B	P22528	89 aa		3.78	□□□□□ -1.8
NPIPB4-215	ENST00000542133		K7EQZ3	153 aa		3.77	□□□□□ -1.81
NPIPB4-215	ENST00000542133	GPR98	Q8WXG9	6306 aa		3.74	□□□□□ -1.81
NPIPB4-215	ENST00000542133	KRTAP2-3	P0C7H8	128 aa		3.73	□□□□□ -1.81
NPIPB4-215	ENST00000542133	KRTAP2-4	Q9BYR9	128 aa		3.73	□□□□□ -1.81
NPIPB4-215	ENST00000542133	CRIPT	Q9P021	101 aa		3.72	□□□□□ -1.81
NPIPB4-215	ENST00000542133	KRTAP5-9	P26371	169 aa		3.71	□□□□□ -1.82
NPIPB4-215	ENST00000542133	WFDC13	Q8IUB5	93 aa		3.69	□□□□□ -1.82
NPIPB4-215	ENST00000542133	KRTAP10-7	P60409	375 aa	Predicted RBP	3.67	□□□□□ -1.82
NPIPB4-215	ENST00000542133	DEFB105A	Q8NG35	78 aa		3.65	□□□□□ -1.83
NPIPB4-215	ENST00000542133	IGKV2D-30	A0A075B6S6	120 aa		3.64	□□□□□ -1.83

Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms