RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 SPRR2FQ96RM1 72 aa3.01□□□□□ -1.93
CD44-237ENST00000534082 HIST1H4GQ99525 98 aa3.01□□□□□ -1.93
CD44-237ENST00000534082 DSTQ03001 7570 aaKnown RBP3□□□□□ -1.93
CD44-237ENST00000534082 TMEM223A0PJW6 202 aa3□□□□□ -1.93
CD44-237ENST00000534082 ATXN8Q156A1 80 aa3□□□□□ -1.93
CD44-237ENST00000534082 Q6JHZ5 121 aa3□□□□□ -1.93
CD44-237ENST00000534082 SOSTDC1Q6X4U4 206 aa3□□□□□ -1.93
CD44-237ENST00000534082 ELOF1P60002 83 aaKnown RBP2.99□□□□□ -1.93
CD44-237ENST00000534082 KRTAP10-5P60370 271 aa2.99□□□□□ -1.93
CD44-237ENST00000534082 CLEC2BQ92478 149 aa2.99□□□□□ -1.93
CD44-237ENST00000534082 A0A096LNJ9 63 aa2.98□□□□□ -1.93
CD44-237ENST00000534082 MT1BP07438 61 aa2.98□□□□□ -1.93
CD44-237ENST00000534082 C20orf197Q8N268 126 aa2.98□□□□□ -1.93
CD44-237ENST00000534082 IGLV5-48A0A075B6I7 105 aa2.97□□□□□ -1.93
CD44-237ENST00000534082 TRAV7A0A075B6U4 112 aa2.97□□□□□ -1.93
CD44-237ENST00000534082 SPRR2DP22532 72 aa2.97□□□□□ -1.93
CD44-237ENST00000534082 COX7BP24311 80 aa2.97□□□□□ -1.93
CD44-237ENST00000534082 ADAMTSL4-AS1Q5T5F5 129 aa2.97□□□□□ -1.93
CD44-237ENST00000534082 A0A1B0GW54 56 aa2.96□□□□□ -1.94
CD44-237ENST00000534082 F8WEM9 126 aa2.95□□□□□ -1.94
CD44-237ENST00000534082 LEPROTO15243 131 aa2.95□□□□□ -1.94
CD44-237ENST00000534082 TSPEAR-AS2P59090 65 aa2.95□□□□□ -1.94
CD44-237ENST00000534082 AHNAK2Q8IVF2 5795 aa2.95□□□□□ -1.94
CD44-237ENST00000534082 DSCR10P59022 87 aa2.94□□□□□ -1.94
CD44-237ENST00000534082 ATP5EP2Q5VTU8 51 aa2.94□□□□□ -1.94
CD44-237ENST00000534082 Q5VV11 94 aa2.94□□□□□ -1.94
CD44-237ENST00000534082 PRO1854Q9UHT4 67 aa2.94□□□□□ -1.94
CD44-237ENST00000534082 CYP4F30PQ9H0H9 118 aa2.93□□□□□ -1.94
CD44-237ENST00000534082 HMCN1Q96RW7 5635 aa2.91□□□□□ -1.94
CD44-237ENST00000534082 TRAV22A0A0B4J277 110 aa2.91□□□□□ -1.94
CD44-237ENST00000534082 hDV103S1A0JD37 113 aa2.91□□□□□ -1.94
CD44-237ENST00000534082 HCG22E2RYF7 251 aa2.91□□□□□ -1.94
CD44-237ENST00000534082 TRAV12-1A0A0B4J245 112 aa2.9□□□□□ -1.95
CD44-237ENST00000534082 SPTSSBQ8NFR3 76 aa2.9□□□□□ -1.95
CD44-237ENST00000534082 TTTY13Q9BZ97 58 aa2.9□□□□□ -1.95
CD44-237ENST00000534082 CDC42SE1Q9NRR8 79 aa2.9□□□□□ -1.95
CD44-237ENST00000534082 A0A1W2PNM2 257 aa2.89□□□□□ -1.95
CD44-237ENST00000534082 KRTAP19-8Q3LI54 63 aa2.89□□□□□ -1.95
CD44-237ENST00000534082 ZNF815PA8K554 130 aa2.88□□□□□ -1.95
CD44-237ENST00000534082 COX6CP09669 75 aa2.88□□□□□ -1.95
CD44-237ENST00000534082 A0A087WVE0 104 aa2.87□□□□□ -1.95
CD44-237ENST00000534082 A8MU10 97 aa2.87□□□□□ -1.95
CD44-237ENST00000534082 PLNP26678 52 aa2.87□□□□□ -1.95
CD44-237ENST00000534082 WFDC13Q8IUB5 93 aa2.87□□□□□ -1.95
CD44-237ENST00000534082 LINC00308Q8TCZ7 52 aa2.87□□□□□ -1.95
CD44-237ENST00000534082 IGKV3D-7A0A0C4DH55 119 aa2.86□□□□□ -1.95
CD44-237ENST00000534082 A0A0J9YXY3 114 aa2.86□□□□□ -1.95
CD44-237ENST00000534082 TRBV7-4A0A0J9YYF1 115 aa2.86□□□□□ -1.95
CD44-237ENST00000534082 SPINK7P58062 85 aa2.86□□□□□ -1.95
CD44-237ENST00000534082 KRTAP10-12P60413 245 aa2.86□□□□□ -1.95
CD44-237ENST00000534082 CHKB-CPT1BH3BT56 60 aa2.85□□□□□ -1.95
CD44-237ENST00000534082 KRTAP8-1Q8IUC2 63 aa2.85□□□□□ -1.95
CD44-237ENST00000534082 SNURFQ9Y675 71 aa2.85□□□□□ -1.95
CD44-237ENST00000534082 LITAFQ99732 161 aa2.84□□□□□ -1.95
CD44-237ENST00000534082 SPRR2GQ9BYE4 73 aa2.84□□□□□ -1.95
CD44-237ENST00000534082 LOC101927531A0A1B0GV80 90 aa2.83□□□□□ -1.96
CD44-237ENST00000534082 DNAL4O96015 105 aa2.83□□□□□ -1.96
CD44-237ENST00000534082 BAALC-AS2P0C853 105 aa2.83□□□□□ -1.96
CD44-237ENST00000534082 ROMO1P60602 79 aa2.83□□□□□ -1.96
CD44-237ENST00000534082 LCE1FQ5T754 118 aa2.83□□□□□ -1.96
CD44-237ENST00000534082 CASC2Q6XLA1 102 aa2.83□□□□□ -1.96
CD44-237ENST00000534082 TMEM254Q8TBM7 123 aa2.83□□□□□ -1.96
CD44-237ENST00000534082 PRAC1Q96KF2 57 aa2.83□□□□□ -1.96
CD44-237ENST00000534082 KRTAP5-1Q6L8H4 278 aa2.82□□□□□ -1.96
CD44-237ENST00000534082 Q6ZQY7 126 aa2.82□□□□□ -1.96
CD44-237ENST00000534082 ADM2Q7Z4H4 148 aa2.82□□□□□ -1.96
CD44-237ENST00000534082 A0A087WSZ3 146 aa2.81□□□□□ -1.96
CD44-237ENST00000534082 MUSTN1Q8IVN3 82 aa2.81□□□□□ -1.96
CD44-237ENST00000534082 C1orf64Q8NEQ6 169 aa2.81□□□□□ -1.96
CD44-237ENST00000534082 ZCCHC13Q8WW36 166 aaKnown RBP2.81□□□□□ -1.96
CD44-237ENST00000534082 A6NED7 52 aa2.8□□□□□ -1.96
CD44-237ENST00000534082 KRTAP9-6A8MVA2 160 aa2.8□□□□□ -1.96
CD44-237ENST00000534082 H1FX-AS1Q4G0G2 97 aa2.8□□□□□ -1.96
CD44-237ENST00000534082 C8orf17Q9NRJ1 99 aa2.8□□□□□ -1.96
CD44-237ENST00000534082 IGKV4-1P06312 121 aa2.78□□□□□ -1.96
CD44-237ENST00000534082 LUZP6Q538Z0 58 aa2.78□□□□□ -1.96
CD44-237ENST00000534082 K7ERS5 55 aa2.77□□□□□ -1.97
CD44-237ENST00000534082 NREPQ16612 68 aa2.77□□□□□ -1.97
CD44-237ENST00000534082 LINC00575Q6W349 94 aa2.77□□□□□ -1.97
CD44-237ENST00000534082 SMIM11BQ8TCY0 68 aa2.77□□□□□ -1.97
CD44-237ENST00000534082 PRR15LQ9BU68 103 aa2.77□□□□□ -1.97
CD44-237ENST00000534082 OCR1Q9BZK8 76 aa2.77□□□□□ -1.97
CD44-237ENST00000534082 Q6ZQT0 140 aa2.76□□□□□ -1.97
CD44-237ENST00000534082 UBL5Q9BZL1 73 aa2.75□□□□□ -1.97
CD44-237ENST00000534082 MIR22HGQ0VDD5 57 aa2.74□□□□□ -1.97
CD44-237ENST00000534082 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.74□□□□□ -1.97
CD44-237ENST00000534082 DEFB116Q30KQ4 102 aa2.73□□□□□ -1.97
CD44-237ENST00000534082 KRTAP5-10Q6L8G5 202 aa2.73□□□□□ -1.97
CD44-237ENST00000534082 P0C880 135 aa2.72□□□□□ -1.97
CD44-237ENST00000534082 CSAG1Q6PB30 78 aa2.72□□□□□ -1.97
CD44-237ENST00000534082 C14orf132Q9NPU4 83 aa2.72□□□□□ -1.97
CD44-237ENST00000534082 ORMDL1Q9P0S3 153 aa2.72□□□□□ -1.97
CD44-237ENST00000534082 JMJD7-PLA2G4BH0Y9G9 81 aa2.71□□□□□ -1.98
CD44-237ENST00000534082 LCE3CQ5T5A8 94 aa2.71□□□□□ -1.98
CD44-237ENST00000534082 PRO2289Q9P1D8 64 aa2.71□□□□□ -1.98
CD44-237ENST00000534082 LINC01558Q9Y6Z2 57 aa2.71□□□□□ -1.98
CD44-237ENST00000534082 A0A1B0GVX0 72 aa2.7□□□□□ -1.98
CD44-237ENST00000534082 BPY2O14599 106 aa2.7□□□□□ -1.98
CD44-237ENST00000534082 NDUFB1O75438 58 aa2.7□□□□□ -1.98
CD44-237ENST00000534082 KRTAP12-2P59991 146 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms