RNA–Protein interactions for RNA: ENST00000532649.5

CTNND1-232, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,026 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-232ENST00000532649 DNAH5Q8TE73 4624 aa3.9□□□□□ -1.79
CTNND1-232ENST00000532649 DNAH1Q9P2D7 4330 aa3.89□□□□□ -1.79
CTNND1-232ENST00000532649 KRTAP3-2Q9BYR7 98 aa3.88□□□□□ -1.79
CTNND1-232ENST00000532649 PLECQ15149 4684 aaKnown RBP3.87□□□□□ -1.79
CTNND1-232ENST00000532649 DNHD1Q96M86 4753 aa3.86□□□□□ -1.79
CTNND1-232ENST00000532649 KRTAP12-3P60328 96 aa3.8□□□□□ -1.8
CTNND1-232ENST00000532649 VPS13DQ5THJ4 4388 aa3.8□□□□□ -1.8
CTNND1-232ENST00000532649 DNAH11Q96DT5 4516 aa3.8□□□□□ -1.8
CTNND1-232ENST00000532649 KRTAP10-5P60370 271 aa3.79□□□□□ -1.8
CTNND1-232ENST00000532649 KRTAP8-1Q8IUC2 63 aa3.76□□□□□ -1.81
CTNND1-232ENST00000532649 DNAH10Q8IVF4 4471 aa3.76□□□□□ -1.81
CTNND1-232ENST00000532649 DNAH17Q9UFH2 4485 aa3.76□□□□□ -1.81
CTNND1-232ENST00000532649 STARD9Q9P2P6 4700 aa3.75□□□□□ -1.81
CTNND1-232ENST00000532649 LORP23490 312 aaPredicted RBP3.74□□□□□ -1.81
CTNND1-232ENST00000532649 DYNC1H1Q14204 4646 aaKnown RBP3.73□□□□□ -1.81
CTNND1-232ENST00000532649 LRP1BQ9NZR2 4599 aa3.72□□□□□ -1.81
CTNND1-232ENST00000532649 KRTAP4-1Q9BYQ7 146 aa3.72□□□□□ -1.81
CTNND1-232ENST00000532649 PRKDCP78527 4128 aaKnown RBP3.72□□□□□ -1.81
CTNND1-232ENST00000532649 LCE3AQ5TA76 89 aa3.72□□□□□ -1.81
CTNND1-232ENST00000532649 ANK2Q01484 3957 aa3.71□□□□□ -1.81
CTNND1-232ENST00000532649 DNAH3Q8TD57 4116 aa3.7□□□□□ -1.82
CTNND1-232ENST00000532649 FAT2Q9NYQ8 4349 aa3.7□□□□□ -1.82
CTNND1-232ENST00000532649 DNAH2Q9P225 4427 aa3.69□□□□□ -1.82
CTNND1-232ENST00000532649 KRTAP23-1A1A580 65 aa3.67□□□□□ -1.82
CTNND1-232ENST00000532649 MT1HP80294 61 aa3.67□□□□□ -1.82
CTNND1-232ENST00000532649 DYNC2H1Q8NCM8 4307 aaKnown RBP3.67□□□□□ -1.82
CTNND1-232ENST00000532649 FAT1Q14517 4588 aa3.67□□□□□ -1.82
CTNND1-232ENST00000532649 KMT2AQ03164 3969 aa3.64□□□□□ -1.83
CTNND1-232ENST00000532649 RYR1P21817 5038 aa3.63□□□□□ -1.83
CTNND1-232ENST00000532649 SACSQ9NZJ4 4579 aa3.6□□□□□ -1.83
CTNND1-232ENST00000532649 CMYA5Q8N3K9 4069 aa3.58□□□□□ -1.84
CTNND1-232ENST00000532649 MT2AP02795 61 aa3.58□□□□□ -1.84
CTNND1-232ENST00000532649 VPS13BQ7Z7G8 4022 aa3.56□□□□□ -1.84
CTNND1-232ENST00000532649 DNAH8Q96JB1 4490 aa3.55□□□□□ -1.84
CTNND1-232ENST00000532649 KRTAP10-7P60409 375 aaPredicted RBP3.54□□□□□ -1.84
CTNND1-232ENST00000532649 DNAH6Q9C0G6 4158 aa3.53□□□□□ -1.84
CTNND1-232ENST00000532649 LYSTQ99698 3801 aa3.53□□□□□ -1.84
CTNND1-232ENST00000532649 KRTAP17-1Q9BYP8 105 aa3.52□□□□□ -1.85
CTNND1-232ENST00000532649 MT1FP04733 61 aa3.51□□□□□ -1.85
CTNND1-232ENST00000532649 SPRR2GQ9BYE4 73 aa3.5□□□□□ -1.85
CTNND1-232ENST00000532649 APOBP04114 4563 aaKnown RBP3.49□□□□□ -1.85
CTNND1-232ENST00000532649 RYR3Q15413 4870 aa3.49□□□□□ -1.85
CTNND1-232ENST00000532649 DNAH7Q8WXX0 4024 aa3.48□□□□□ -1.85
CTNND1-232ENST00000532649 SPRR2FQ96RM1 72 aa3.46□□□□□ -1.86
CTNND1-232ENST00000532649 KIAA1109Q2LD37 5005 aa3.44□□□□□ -1.86
CTNND1-232ENST00000532649 FRAS1Q86XX4 4008 aa3.43□□□□□ -1.86
CTNND1-232ENST00000532649 HECTD4Q9Y4D8 3996 aa3.4□□□□□ -1.87
CTNND1-232ENST00000532649 FAT3Q8TDW7 4589 aa3.39□□□□□ -1.87
CTNND1-232ENST00000532649 RYR2Q92736 4967 aa3.38□□□□□ -1.87
CTNND1-232ENST00000532649 LRP1Q07954 4544 aaKnown RBP3.37□□□□□ -1.87
CTNND1-232ENST00000532649 MYCBP2O75592 4640 aa3.37□□□□□ -1.87
CTNND1-232ENST00000532649 SPRR2EP22531 72 aa3.34□□□□□ -1.87
CTNND1-232ENST00000532649 SPRR2BP35325 72 aa3.34□□□□□ -1.87
CTNND1-232ENST00000532649 SPRR2AP35326 72 aa3.34□□□□□ -1.87
CTNND1-232ENST00000532649 HSPG2P98160 4391 aa3.33□□□□□ -1.88
CTNND1-232ENST00000532649 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
CTNND1-232ENST00000532649 HYDINQ4G0P3 5121 aa3.32□□□□□ -1.88
CTNND1-232ENST00000532649 BIRC6Q9NR09 4857 aa3.31□□□□□ -1.88
CTNND1-232ENST00000532649 HERC2O95714 4834 aa3.3□□□□□ -1.88
CTNND1-232ENST00000532649 KRTAP19-1Q8IUB9 90 aa3.28□□□□□ -1.88
CTNND1-232ENST00000532649 KRTAP19-8Q3LI54 63 aa3.27□□□□□ -1.89
CTNND1-232ENST00000532649 LCE3CQ5T5A8 94 aa3.27□□□□□ -1.89
CTNND1-232ENST00000532649 PKHD1P08F94 4074 aa3.26□□□□□ -1.89
CTNND1-232ENST00000532649 SPRR2DP22532 72 aa3.25□□□□□ -1.89
CTNND1-232ENST00000532649 KRTAP9-8Q9BYQ0 159 aa3.23□□□□□ -1.89
CTNND1-232ENST00000532649 KRTAP19-4Q3LI73 84 aa3.22□□□□□ -1.89
CTNND1-232ENST00000532649 PKHD1L1Q86WI1 4243 aa3.22□□□□□ -1.89
CTNND1-232ENST00000532649 LCE2CQ5TA81 110 aa3.21□□□□□ -1.9
CTNND1-232ENST00000532649 PKD1P98161 4303 aa3.19□□□□□ -1.9
CTNND1-232ENST00000532649 LRP2P98164 4655 aa3.19□□□□□ -1.9
CTNND1-232ENST00000532649 MT1BP07438 61 aa3.19□□□□□ -1.9
CTNND1-232ENST00000532649 MT1XP80297 61 aa3.19□□□□□ -1.9
CTNND1-232ENST00000532649 LCE3BQ5TA77 95 aa3.18□□□□□ -1.9
CTNND1-232ENST00000532649 KRTAP12-4P60329 112 aa3.17□□□□□ -1.9
CTNND1-232ENST00000532649 LCE2BO14633 110 aa3.17□□□□□ -1.9
CTNND1-232ENST00000532649 HERC1Q15751 4861 aa3.17□□□□□ -1.9
CTNND1-232ENST00000532649 LPAP08519 4548 aa3.17□□□□□ -1.9
CTNND1-232ENST00000532649 PCLOQ9Y6V0 5065 aa3.16□□□□□ -1.9
CTNND1-232ENST00000532649 KRTAP9-3Q9BYQ3 159 aa3.16□□□□□ -1.9
CTNND1-232ENST00000532649 KMT2CQ8NEZ4 4911 aaKnown RBP3.11□□□□□ -1.91
CTNND1-232ENST00000532649 TNXBP22105 4242 aa3.11□□□□□ -1.91
CTNND1-232ENST00000532649 KRTAP4-8A0A0G2JLE6 195 aa3.09□□□□□ -1.92
CTNND1-232ENST00000532649 KRTAP4-8Q9BYQ9 185 aa3.09□□□□□ -1.92
CTNND1-232ENST00000532649 KRTAP19-2Q3LHN2 52 aa3.06□□□□□ -1.92
CTNND1-232ENST00000532649 MT1GP13640 62 aa3.05□□□□□ -1.92
CTNND1-232ENST00000532649 EPPK1P58107 5090 aaKnown RBP3.02□□□□□ -1.93
CTNND1-232ENST00000532649 LCE3DQ9BYE3 92 aa2.98□□□□□ -1.93
CTNND1-232ENST00000532649 FLGP20930 4061 aaPredicted RBP2.98□□□□□ -1.93
CTNND1-232ENST00000532649 LCE2DQ5TA82 110 aaPredicted RBP2.97□□□□□ -1.93
CTNND1-232ENST00000532649 ABCA13Q86UQ4 5058 aa2.97□□□□□ -1.93
CTNND1-232ENST00000532649 KRTAP9-2Q9BYQ4 174 aa2.95□□□□□ -1.94
CTNND1-232ENST00000532649 MUC17Q685J3 4493 aa2.93□□□□□ -1.94
CTNND1-232ENST00000532649 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
CTNND1-232ENST00000532649 KRTAP19-3Q7Z4W3 81 aa2.92□□□□□ -1.94
CTNND1-232ENST00000532649 KRTAP19-6Q3LI70 58 aa2.89□□□□□ -1.95
CTNND1-232ENST00000532649 LCE2AQ5TA79 106 aaPredicted RBP2.88□□□□□ -1.95
CTNND1-232ENST00000532649 MT1EP04732 61 aa2.87□□□□□ -1.95
CTNND1-232ENST00000532649 MT1LQ93083 61 aa2.87□□□□□ -1.95
CTNND1-232ENST00000532649 SPRR5A0A1B0GTR4 108 aa2.87□□□□□ -1.95
CTNND1-232ENST00000532649 KRTAP4-7Q9BYR0 210 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms