RNA–Protein interactions for RNA: ENST00000531270.5

LRRK1-207, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 1 (best)

Gene LRRK1, Length 6,015 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-207ENST00000531270 FBN3Q75N90 2809 aa6.21□□□□□ -1.42
LRRK1-207ENST00000531270 SRRM2Q9UQ35 2752 aaKnown RBP6.15□□□□□ -1.43
LRRK1-207ENST00000531270 MEGF8Q7Z7M0 2845 aa6.13□□□□□ -1.43
LRRK1-207ENST00000531270 DNAH10Q8IVF4 4471 aa6.04□□□□□ -1.44
LRRK1-207ENST00000531270 KRTAP23-1A1A580 65 aa6.04□□□□□ -1.44
LRRK1-207ENST00000531270 COL7A1Q02388 2944 aa5.98□□□□□ -1.45
LRRK1-207ENST00000531270 KRTAP10-4P60372 401 aaPredicted RBP5.96□□□□□ -1.46
LRRK1-207ENST00000531270 DNAH9Q9NYC9 4486 aa5.96□□□□□ -1.46
LRRK1-207ENST00000531270 DNAH1Q9P2D7 4330 aa5.93□□□□□ -1.46
LRRK1-207ENST00000531270 ALMS1Q8TCU4 4167 aa5.91□□□□□ -1.46
LRRK1-207ENST00000531270 PLECQ15149 4684 aaKnown RBP5.84□□□□□ -1.47
LRRK1-207ENST00000531270 SPRR2FQ96RM1 72 aa5.81□□□□□ -1.48
LRRK1-207ENST00000531270 KRTAP10-7P60409 375 aaPredicted RBP5.81□□□□□ -1.48
LRRK1-207ENST00000531270 FRAS1Q86XX4 4008 aa5.78□□□□□ -1.48
LRRK1-207ENST00000531270 ANK2Q01484 3957 aa5.75□□□□□ -1.49
LRRK1-207ENST00000531270 MT1HP80294 61 aa5.72□□□□□ -1.49
LRRK1-207ENST00000531270 DNAH2Q9P225 4427 aa5.71□□□□□ -1.49
LRRK1-207ENST00000531270 DNAH3Q8TD57 4116 aa5.71□□□□□ -1.5
LRRK1-207ENST00000531270 DNAH11Q96DT5 4516 aa5.7□□□□□ -1.5
LRRK1-207ENST00000531270 DNAH5Q8TE73 4624 aa5.69□□□□□ -1.5
LRRK1-207ENST00000531270 KRTAP19-5Q3LI72 72 aa5.68□□□□□ -1.5
LRRK1-207ENST00000531270 LYSTQ99698 3801 aa5.67□□□□□ -1.5
LRRK1-207ENST00000531270 KRTAP4-1Q9BYQ7 146 aa5.67□□□□□ -1.5
LRRK1-207ENST00000531270 KMT2AQ03164 3969 aa5.66□□□□□ -1.5
LRRK1-207ENST00000531270 DNAH8Q96JB1 4490 aa5.64□□□□□ -1.51
LRRK1-207ENST00000531270 STARD9Q9P2P6 4700 aa5.64□□□□□ -1.51
LRRK1-207ENST00000531270 MT2AP02795 61 aa5.62□□□□□ -1.51
LRRK1-207ENST00000531270 CMYA5Q8N3K9 4069 aa5.62□□□□□ -1.51
LRRK1-207ENST00000531270 DNAH17Q9UFH2 4485 aa5.6□□□□□ -1.51
LRRK1-207ENST00000531270 VPS13DQ5THJ4 4388 aa5.58□□□□□ -1.52
LRRK1-207ENST00000531270 LCE3CQ5T5A8 94 aa5.55□□□□□ -1.52
LRRK1-207ENST00000531270 MT1FP04733 61 aa5.51□□□□□ -1.53
LRRK1-207ENST00000531270 SPRR2EP22531 72 aa5.49□□□□□ -1.53
LRRK1-207ENST00000531270 SPRR2BP35325 72 aa5.49□□□□□ -1.53
LRRK1-207ENST00000531270 SPRR2AP35326 72 aa5.49□□□□□ -1.53
LRRK1-207ENST00000531270 LRP1BQ9NZR2 4599 aa5.49□□□□□ -1.53
LRRK1-207ENST00000531270 VPS13BQ7Z7G8 4022 aa5.49□□□□□ -1.53
LRRK1-207ENST00000531270 SPRR2GQ9BYE4 73 aa5.48□□□□□ -1.53
LRRK1-207ENST00000531270 FAT1Q14517 4588 aa5.46□□□□□ -1.54
LRRK1-207ENST00000531270 LCE3BQ5TA77 95 aa5.45□□□□□ -1.54
LRRK1-207ENST00000531270 DNAH7Q8WXX0 4024 aa5.44□□□□□ -1.54
LRRK1-207ENST00000531270 PRKDCP78527 4128 aaKnown RBP5.44□□□□□ -1.54
LRRK1-207ENST00000531270 FAT2Q9NYQ8 4349 aa5.43□□□□□ -1.54
LRRK1-207ENST00000531270 DNAH6Q9C0G6 4158 aa5.4□□□□□ -1.55
LRRK1-207ENST00000531270 DYNC2H1Q8NCM8 4307 aaKnown RBP5.4□□□□□ -1.55
LRRK1-207ENST00000531270 DYNC1H1Q14204 4646 aaKnown RBP5.4□□□□□ -1.55
LRRK1-207ENST00000531270 SACSQ9NZJ4 4579 aa5.36□□□□□ -1.55
LRRK1-207ENST00000531270 DNHD1Q96M86 4753 aa5.33□□□□□ -1.56
LRRK1-207ENST00000531270 HECTD4Q9Y4D8 3996 aa5.32□□□□□ -1.56
LRRK1-207ENST00000531270 SPRR2DP22532 72 aa5.31□□□□□ -1.56
LRRK1-207ENST00000531270 MT1GP13640 62 aa5.27□□□□□ -1.57
LRRK1-207ENST00000531270 APOBP04114 4563 aaKnown RBP5.23□□□□□ -1.57
LRRK1-207ENST00000531270 KRTAP12-4P60329 112 aa5.21□□□□□ -1.58
LRRK1-207ENST00000531270 LCE2BO14633 110 aa5.2□□□□□ -1.58
LRRK1-207ENST00000531270 RYR1P21817 5038 aa5.14□□□□□ -1.59
LRRK1-207ENST00000531270 MYCBP2O75592 4640 aa5.14□□□□□ -1.59
LRRK1-207ENST00000531270 KRTAP17-1Q9BYP8 105 aa5.12□□□□□ -1.59
LRRK1-207ENST00000531270 KRTAP19-4Q3LI73 84 aa5.1□□□□□ -1.59
LRRK1-207ENST00000531270 LRP1Q07954 4544 aaKnown RBP5.07□□□□□ -1.6
LRRK1-207ENST00000531270 LPAP08519 4548 aa5.03□□□□□ -1.6
LRRK1-207ENST00000531270 LCE3DQ9BYE3 92 aa5.03□□□□□ -1.6
LRRK1-207ENST00000531270 FAT3Q8TDW7 4589 aa5.02□□□□□ -1.61
LRRK1-207ENST00000531270 HYDINQ4G0P3 5121 aa5.01□□□□□ -1.61
LRRK1-207ENST00000531270 KRTAP4-8A0A0G2JLE6 195 aa5□□□□□ -1.61
LRRK1-207ENST00000531270 KRTAP4-8Q9BYQ9 185 aa5□□□□□ -1.61
LRRK1-207ENST00000531270 MT1XP80297 61 aa5□□□□□ -1.61
LRRK1-207ENST00000531270 KRTAP19-8Q3LI54 63 aa4.98□□□□□ -1.61
LRRK1-207ENST00000531270 KRTAP19-1Q8IUB9 90 aa4.96□□□□□ -1.61
LRRK1-207ENST00000531270 PKHD1P08F94 4074 aa4.96□□□□□ -1.62
LRRK1-207ENST00000531270 LCE2CQ5TA81 110 aa4.93□□□□□ -1.62
LRRK1-207ENST00000531270 LCE3EQ5T5B0 92 aa4.92□□□□□ -1.62
LRRK1-207ENST00000531270 RYR3Q15413 4870 aa4.92□□□□□ -1.62
LRRK1-207ENST00000531270 HSPG2P98160 4391 aa4.9□□□□□ -1.62
LRRK1-207ENST00000531270 LCE2DQ5TA82 110 aaPredicted RBP4.89□□□□□ -1.63
LRRK1-207ENST00000531270 MT1BP07438 61 aa4.86□□□□□ -1.63
LRRK1-207ENST00000531270 PKD1P98161 4303 aa4.81□□□□□ -1.64
LRRK1-207ENST00000531270 MT4P47944 62 aa4.8□□□□□ -1.64
LRRK1-207ENST00000531270 TNXBP22105 4242 aa4.78□□□□□ -1.64
LRRK1-207ENST00000531270 KRTAP4-7Q9BYR0 210 aa4.77□□□□□ -1.65
LRRK1-207ENST00000531270 KRTAP9-8Q9BYQ0 159 aa4.75□□□□□ -1.65
LRRK1-207ENST00000531270 PKHD1L1Q86WI1 4243 aa4.74□□□□□ -1.65
LRRK1-207ENST00000531270 LRP2P98164 4655 aa4.73□□□□□ -1.65
LRRK1-207ENST00000531270 KRTAP19-3Q7Z4W3 81 aa4.71□□□□□ -1.66
LRRK1-207ENST00000531270 LCE1BQ5T7P3 118 aa4.71□□□□□ -1.66
LRRK1-207ENST00000531270 KRTAP9-3Q9BYQ3 159 aa4.67□□□□□ -1.66
LRRK1-207ENST00000531270 SPRR5A0A1B0GTR4 108 aa4.66□□□□□ -1.66
LRRK1-207ENST00000531270 KIAA1109Q2LD37 5005 aa4.66□□□□□ -1.66
LRRK1-207ENST00000531270 PRM1P04553 51 aa4.64□□□□□ -1.67
LRRK1-207ENST00000531270 RYR2Q92736 4967 aa4.64□□□□□ -1.67
LRRK1-207ENST00000531270 LCE1DQ5T752 114 aa4.63□□□□□ -1.67
LRRK1-207ENST00000531270 KMT2CQ8NEZ4 4911 aaKnown RBP4.62□□□□□ -1.67
LRRK1-207ENST00000531270 BIRC6Q9NR09 4857 aa4.61□□□□□ -1.67
LRRK1-207ENST00000531270 MT1LQ93083 61 aa4.6□□□□□ -1.67
LRRK1-207ENST00000531270 MT3P25713 68 aa4.59□□□□□ -1.68
LRRK1-207ENST00000531270 LOC100996750A0A140TA64 210 aa4.54□□□□□ -1.68
LRRK1-207ENST00000531270 MT1EP04732 61 aa4.54□□□□□ -1.68
LRRK1-207ENST00000531270 HERC1Q15751 4861 aa4.53□□□□□ -1.68
LRRK1-207ENST00000531270 MT1MQ8N339 61 aa4.46□□□□□ -1.7
LRRK1-207ENST00000531270 KRTAP4-3Q9BYR4 195 aa4.46□□□□□ -1.7
LRRK1-207ENST00000531270 HERC2O95714 4834 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms