RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 C1orf137Q5JT78 98 aa3.32□□□□□ -1.88
NUP54-218ENST00000515460 C16orf74Q96GX8 76 aa3.32□□□□□ -1.88
NUP54-218ENST00000515460 SPRR4Q96PI1 79 aa3.32□□□□□ -1.88
NUP54-218ENST00000515460 NEBP20929 6669 aa3.31□□□□□ -1.88
NUP54-218ENST00000515460 A0A096LPF7 62 aa3.31□□□□□ -1.88
NUP54-218ENST00000515460 H3BNG1 76 aa3.31□□□□□ -1.88
NUP54-218ENST00000515460 IGLV6-57P01721 117 aa3.31□□□□□ -1.88
NUP54-218ENST00000515460 CHTF8P0CG12 524 aa3.31□□□□□ -1.88
NUP54-218ENST00000515460 KRTAP10-1P60331 282 aa3.31□□□□□ -1.88
NUP54-218ENST00000515460 TOMM7Q9P0U1 55 aa3.31□□□□□ -1.88
NUP54-218ENST00000515460 IGLV10-54A0A075B6I4 117 aa3.3□□□□□ -1.88
NUP54-218ENST00000515460 IGLV5-48A0A075B6I7 105 aa3.3□□□□□ -1.88
NUP54-218ENST00000515460 LINC00483Q53H64 154 aa3.3□□□□□ -1.88
NUP54-218ENST00000515460 DMAC1Q96GE9 116 aa3.3□□□□□ -1.88
NUP54-218ENST00000515460 KLK12Q9UKR0 248 aa3.29□□□□□ -1.88
NUP54-218ENST00000515460 A0A087WTM6 91 aa3.28□□□□□ -1.88
NUP54-218ENST00000515460 CAMK2N2Q96S95 79 aa3.28□□□□□ -1.88
NUP54-218ENST00000515460 IGLV1-50A0A075B6I6 118 aa3.27□□□□□ -1.89
NUP54-218ENST00000515460 ZNF861PO60384 105 aa3.27□□□□□ -1.89
NUP54-218ENST00000515460 LUZP6Q538Z0 58 aa3.27□□□□□ -1.89
NUP54-218ENST00000515460 TRGV1A0A0A0MS02 117 aa3.26□□□□□ -1.89
NUP54-218ENST00000515460 A8MWP4 228 aa3.26□□□□□ -1.89
NUP54-218ENST00000515460 K7EQZ3 153 aa3.26□□□□□ -1.89
NUP54-218ENST00000515460 P0C880 135 aa3.26□□□□□ -1.89
NUP54-218ENST00000515460 KRTAP5-2Q701N4 177 aa3.26□□□□□ -1.89
NUP54-218ENST00000515460 C20orf166-AS1Q96NR2 134 aa3.26□□□□□ -1.89
NUP54-218ENST00000515460 PRO0255Q9UI72 69 aa3.26□□□□□ -1.89
NUP54-218ENST00000515460 USH2AO75445 5202 aa3.25□□□□□ -1.89
NUP54-218ENST00000515460 FCGBPQ9Y6R7 5405 aaPredicted RBP3.25□□□□□ -1.89
NUP54-218ENST00000515460 KRTAP1-4P0C5Y4 121 aa3.25□□□□□ -1.89
NUP54-218ENST00000515460 WFDC10BQ8IUB3 73 aa3.25□□□□□ -1.89
NUP54-218ENST00000515460 TP53AIP1Q9HCN2 124 aa3.25□□□□□ -1.89
NUP54-218ENST00000515460 C8orf17Q9NRJ1 99 aa3.25□□□□□ -1.89
NUP54-218ENST00000515460 GPR98Q8WXG9 6306 aa3.25□□□□□ -1.89
NUP54-218ENST00000515460 A0A1B0GU69 56 aa3.24□□□□□ -1.89
NUP54-218ENST00000515460 HRES1P13985 223 aa3.24□□□□□ -1.89
NUP54-218ENST00000515460 KRTAP4-16G5E9R7 235 aaPredicted RBP3.23□□□□□ -1.89
NUP54-218ENST00000515460 KRTAP26-1Q6PEX3 210 aa3.22□□□□□ -1.89
NUP54-218ENST00000515460 GVQW2A0A096LPI5 108 aaPredicted RBP3.21□□□□□ -1.9
NUP54-218ENST00000515460 KRTAP10-4P60372 401 aaPredicted RBP3.21□□□□□ -1.9
NUP54-218ENST00000515460 Q6ZSA8 131 aa3.21□□□□□ -1.9
NUP54-218ENST00000515460 C7orf33Q8WU49 177 aa3.21□□□□□ -1.9
NUP54-218ENST00000515460 MACF1Q9UPN3 7388 aaKnown RBP3.2□□□□□ -1.9
NUP54-218ENST00000515460 ACYP2P14621 99 aa3.2□□□□□ -1.9
NUP54-218ENST00000515460 LINC01556Q5JQF7 62 aa3.2□□□□□ -1.9
NUP54-218ENST00000515460 WFDC13Q8IUB5 93 aa3.2□□□□□ -1.9
NUP54-218ENST00000515460 A8MUU9 505 aa3.19□□□□□ -1.9
NUP54-218ENST00000515460 KRTAP20-1Q3LI63 56 aa3.19□□□□□ -1.9
NUP54-218ENST00000515460 DHRS4-AS1Q9P1J3 65 aa3.19□□□□□ -1.9
NUP54-218ENST00000515460 IGKV3OR2-268A0A0C4DH90 116 aa3.18□□□□□ -1.9
NUP54-218ENST00000515460 ANGP03950 147 aaKnown RBP3.18□□□□□ -1.9
NUP54-218ENST00000515460 TLX1NBP0CAT3 122 aa3.18□□□□□ -1.9
NUP54-218ENST00000515460 MT1HL1P0DM35 61 aa3.18□□□□□ -1.9
NUP54-218ENST00000515460 Q5W150 140 aa3.18□□□□□ -1.9
NUP54-218ENST00000515460 TYMSOSQ8TAI1 123 aa3.18□□□□□ -1.9
NUP54-218ENST00000515460 CIRBP-AS1Q8TBR5 109 aa3.17□□□□□ -1.9
NUP54-218ENST00000515460 IGKV2-24A0A0C4DH68 120 aa3.16□□□□□ -1.9
NUP54-218ENST00000515460 LINC00472Q9H8W2 130 aa3.16□□□□□ -1.9
NUP54-218ENST00000515460 PCOTHQ58A44 107 aa3.15□□□□□ -1.91
NUP54-218ENST00000515460 CAMK2N1Q7Z7J9 78 aa3.15□□□□□ -1.91
NUP54-218ENST00000515460 RPL37AP8A6NKH3 93 aa3.14□□□□□ -1.91
NUP54-218ENST00000515460 IGLV7-43P04211 117 aa3.14□□□□□ -1.91
NUP54-218ENST00000515460 SPINT4Q6UDR6 99 aa3.14□□□□□ -1.91
NUP54-218ENST00000515460 C6orf48Q9UBA6 75 aa3.14□□□□□ -1.91
NUP54-218ENST00000515460 IGLV8-61A0A075B6I0 122 aa3.13□□□□□ -1.91
NUP54-218ENST00000515460 MUC12Q9UKN1 5478 aa3.13□□□□□ -1.91
NUP54-218ENST00000515460 PANO1I0J062 215 aa3.12□□□□□ -1.91
NUP54-218ENST00000515460 KRTAP5-5Q701N2 237 aaPredicted RBP3.12□□□□□ -1.91
NUP54-218ENST00000515460 ANAPC11Q9NYG5 84 aa3.12□□□□□ -1.91
NUP54-218ENST00000515460 MMP24-AS1A0A0U1RRL7 71 aa3.11□□□□□ -1.91
NUP54-218ENST00000515460 A0A1B0GVX0 72 aa3.11□□□□□ -1.91
NUP54-218ENST00000515460 RPL37AP61513 92 aaKnown RBP3.11□□□□□ -1.91
NUP54-218ENST00000515460 DEFB116Q30KQ4 102 aa3.1□□□□□ -1.91
NUP54-218ENST00000515460 KMT2DO14686 5537 aa3.1□□□□□ -1.91
NUP54-218ENST00000515460 Q6ZRX8 168 aa3.09□□□□□ -1.91
NUP54-218ENST00000515460 LINC00304Q8N9R0 145 aa3.09□□□□□ -1.91
NUP54-218ENST00000515460 FAM168BA1KXE4 195 aa3.08□□□□□ -1.92
NUP54-218ENST00000515460 DEFB105AQ8NG35 78 aa3.08□□□□□ -1.92
NUP54-218ENST00000515460 CLPSL2Q6UWE3 100 aa3.07□□□□□ -1.92
NUP54-218ENST00000515460 UNQ6190/PRO20217Q6UXQ8 127 aa3.07□□□□□ -1.92
NUP54-218ENST00000515460 KRTAP11-1Q8IUC1 163 aa3.07□□□□□ -1.92
NUP54-218ENST00000515460 SPRR1AP35321 89 aa3.06□□□□□ -1.92
NUP54-218ENST00000515460 C15orf56Q8N910 161 aa3.06□□□□□ -1.92
NUP54-218ENST00000515460 IGFL1Q6UW32 110 aa3.05□□□□□ -1.92
NUP54-218ENST00000515460 Q96NJ1 140 aa3.05□□□□□ -1.92
NUP54-218ENST00000515460 SPACA4Q8TDM5 124 aa3.04□□□□□ -1.92
NUP54-218ENST00000515460 SSBP3-AS1Q7Z2R9 100 aa3.02□□□□□ -1.93
NUP54-218ENST00000515460 MRPL34Q9BQ48 92 aaKnown RBP3.02□□□□□ -1.93
NUP54-218ENST00000515460 KRTAP6-3Q3LI67 103 aa3.01□□□□□ -1.93
NUP54-218ENST00000515460 SPINK6Q6UWN8 80 aa3□□□□□ -1.93
NUP54-218ENST00000515460 A0A096LNI7 61 aa2.99□□□□□ -1.93
NUP54-218ENST00000515460 A0A0G2JQZ4 141 aa2.98□□□□□ -1.93
NUP54-218ENST00000515460 A0A1W2PNN7 141 aa2.98□□□□□ -1.93
NUP54-218ENST00000515460 SPRR1BP22528 89 aa2.98□□□□□ -1.93
NUP54-218ENST00000515460 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
NUP54-218ENST00000515460 LCE1BQ5T7P3 118 aa2.98□□□□□ -1.93
NUP54-218ENST00000515460 PSORS1C2Q9UIG4 136 aa2.98□□□□□ -1.93
NUP54-218ENST00000515460 A0A1B0GU33 70 aa2.97□□□□□ -1.93
NUP54-218ENST00000515460 H0YAA0 97 aa2.96□□□□□ -1.94
NUP54-218ENST00000515460 MUC17Q685J3 4493 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms