RNA–Protein interactions for RNA: ENST00000494675.5

LRIF1-203, Transcript of ligand dependent nuclear receptor interacting factor 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LRIF1, Length 1,912 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1-203ENST00000494675 MUC3AQ02505 3323 aa0.33□□□□□ -2.36
LRIF1-203ENST00000494675 MKI67P46013 3256 aaKnown RBP0.32□□□□□ -2.36
LRIF1-203ENST00000494675 POLR2KP53803 58 aaKnown RBP0.32□□□□□ -2.36
LRIF1-203ENST00000494675 LRP1Q07954 4544 aaKnown RBP0.32□□□□□ -2.36
LRIF1-203ENST00000494675 ZANQ9Y493 2812 aa0.32□□□□□ -2.36
LRIF1-203ENST00000494675 PRUNE2Q8WUY3 3088 aa0.32□□□□□ -2.36
LRIF1-203ENST00000494675 CEP250Q9BV73 2442 aa0.31□□□□□ -2.36
LRIF1-203ENST00000494675 GCC2Q8IWJ2 1684 aa0.31□□□□□ -2.36
LRIF1-203ENST00000494675 LAMA1P25391 3075 aa0.31□□□□□ -2.36
LRIF1-203ENST00000494675 STAB2Q8WWQ8 2551 aa0.31□□□□□ -2.36
LRIF1-203ENST00000494675 M0QY20 66 aa0.3□□□□□ -2.36
LRIF1-203ENST00000494675 CLPSL2Q6UWE3 100 aa0.3□□□□□ -2.36
LRIF1-203ENST00000494675 ITPR3Q14573 2671 aa0.3□□□□□ -2.36
LRIF1-203ENST00000494675 DNAH11Q96DT5 4516 aa0.3□□□□□ -2.36
LRIF1-203ENST00000494675 TTTY10Q9BZA0 68 aa0.3□□□□□ -2.36
LRIF1-203ENST00000494675 NOP10Q9NPE3 64 aaKnown RBP0.3□□□□□ -2.36
LRIF1-203ENST00000494675 FLGP20930 4061 aaPredicted RBP0.3□□□□□ -2.36
LRIF1-203ENST00000494675 MGAM2Q2M2H8 2515 aa0.29□□□□□ -2.36
LRIF1-203ENST00000494675 DMDP11532 3685 aa0.29□□□□□ -2.36
LRIF1-203ENST00000494675 DEFB131AP59861 70 aa0.29□□□□□ -2.36
LRIF1-203ENST00000494675 PKHD1L1Q86WI1 4243 aa0.29□□□□□ -2.36
LRIF1-203ENST00000494675 LRBAP50851 2863 aa0.29□□□□□ -2.36
LRIF1-203ENST00000494675 MXRA5Q9NR99 2828 aa0.29□□□□□ -2.36
LRIF1-203ENST00000494675 FAT4Q6V0I7 4981 aa0.29□□□□□ -2.36
LRIF1-203ENST00000494675 SSPOA2VEC9 5147 aa0.29□□□□□ -2.36
LRIF1-203ENST00000494675 PRKDCP78527 4128 aaKnown RBP0.29□□□□□ -2.36
LRIF1-203ENST00000494675 TOMM7Q9P0U1 55 aa0.28□□□□□ -2.36
LRIF1-203ENST00000494675 HSPG2P98160 4391 aa0.28□□□□□ -2.36
LRIF1-203ENST00000494675 CSMD2Q7Z408 3487 aa0.28□□□□□ -2.36
LRIF1-203ENST00000494675 PHGR1C9JFL3 82 aa0.28□□□□□ -2.36
LRIF1-203ENST00000494675 H3BSH0 61 aa0.28□□□□□ -2.36
LRIF1-203ENST00000494675 DEFB110Q30KQ9 67 aa0.28□□□□□ -2.36
LRIF1-203ENST00000494675 LAMA3Q16787 3333 aa0.27□□□□□ -2.37
LRIF1-203ENST00000494675 CFAP46Q8IYW2 2715 aa0.27□□□□□ -2.37
LRIF1-203ENST00000494675 ARHGAP5-AS1Q96IT6 56 aa0.26□□□□□ -2.37
LRIF1-203ENST00000494675 SPRR2DP22532 72 aa0.26□□□□□ -2.37
LRIF1-203ENST00000494675 MYO15AQ9UKN7 3530 aa0.26□□□□□ -2.37
LRIF1-203ENST00000494675 WDFY4Q6ZS81 3184 aa0.26□□□□□ -2.37
LRIF1-203ENST00000494675 DCHS1Q96JQ0 3298 aa0.26□□□□□ -2.37
LRIF1-203ENST00000494675 DNAH12Q6ZR08 3092 aa0.25□□□□□ -2.37
LRIF1-203ENST00000494675 MYCBP2O75592 4640 aa0.25□□□□□ -2.37
LRIF1-203ENST00000494675 TEX15Q9BXT5 2789 aa0.25□□□□□ -2.37
LRIF1-203ENST00000494675 FRYLO94915 3013 aa0.25□□□□□ -2.37
LRIF1-203ENST00000494675 HUWE1Q7Z6Z7 4374 aaKnown RBP0.25□□□□□ -2.37
LRIF1-203ENST00000494675 KRTAP6-2Q3LI66 62 aa0.25□□□□□ -2.37
LRIF1-203ENST00000494675 USP34Q70CQ2 3546 aa0.24□□□□□ -2.37
LRIF1-203ENST00000494675 VPS13DQ5THJ4 4388 aa0.24□□□□□ -2.37
LRIF1-203ENST00000494675 FREM2Q5SZK8 3169 aa0.23□□□□□ -2.37
LRIF1-203ENST00000494675 DNAH8Q96JB1 4490 aa0.23□□□□□ -2.37
LRIF1-203ENST00000494675 TNP1P09430 55 aa0.23□□□□□ -2.37
LRIF1-203ENST00000494675 HMCN2Q8NDA2 5059 aa0.23□□□□□ -2.37
LRIF1-203ENST00000494675 ASPMQ8IZT6 3477 aa0.23□□□□□ -2.37
LRIF1-203ENST00000494675 C9orf92A6NGG3 77 aa0.23□□□□□ -2.37
LRIF1-203ENST00000494675 M0QZ58 72 aa0.23□□□□□ -2.37
LRIF1-203ENST00000494675 CEP350Q5VT06 3117 aa0.22□□□□□ -2.37
LRIF1-203ENST00000494675 DNAH3Q8TD57 4116 aa0.22□□□□□ -2.37
LRIF1-203ENST00000494675 SPART-AS1P0CW21 52 aa0.22□□□□□ -2.37
LRIF1-203ENST00000494675 PKD1P98161 4303 aa0.22□□□□□ -2.37
LRIF1-203ENST00000494675 BOD1L1Q8NFC6 3051 aa0.21□□□□□ -2.38
LRIF1-203ENST00000494675 VPS13CQ709C8 3753 aa0.21□□□□□ -2.38
LRIF1-203ENST00000494675 DNAH9Q9NYC9 4486 aa0.21□□□□□ -2.38
LRIF1-203ENST00000494675 SACSQ9NZJ4 4579 aa0.21□□□□□ -2.38
LRIF1-203ENST00000494675 EYSQ5T1H1 3165 aa0.2□□□□□ -2.38
LRIF1-203ENST00000494675 TLN1Q9Y490 2541 aaKnown RBP0.2□□□□□ -2.38
LRIF1-203ENST00000494675 MYO9AB2RTY4 2548 aa0.2□□□□□ -2.38
LRIF1-203ENST00000494675 LAMA2P24043 3122 aaKnown RBP0.2□□□□□ -2.38
LRIF1-203ENST00000494675 PCNTO95613 3336 aa0.2□□□□□ -2.38
LRIF1-203ENST00000494675 FAT1Q14517 4588 aa0.19□□□□□ -2.38
LRIF1-203ENST00000494675 UNC80Q8N2C7 3258 aa0.19□□□□□ -2.38
LRIF1-203ENST00000494675 SPRR2BP35325 72 aa0.19□□□□□ -2.38
LRIF1-203ENST00000494675 TRRAPQ9Y4A5 3859 aa0.19□□□□□ -2.38
LRIF1-203ENST00000494675 DNAH6Q9C0G6 4158 aa0.18□□□□□ -2.38
LRIF1-203ENST00000494675 APOBP04114 4563 aaKnown RBP0.18□□□□□ -2.38
LRIF1-203ENST00000494675 ITPR2Q14571 2701 aa0.18□□□□□ -2.38
LRIF1-203ENST00000494675 DYNC2H1Q8NCM8 4307 aaKnown RBP0.18□□□□□ -2.38
LRIF1-203ENST00000494675 BRCA2P51587 3418 aa0.18□□□□□ -2.38
LRIF1-203ENST00000494675 ANK3Q12955 4377 aaKnown RBP0.17□□□□□ -2.38
LRIF1-203ENST00000494675 LPAP08519 4548 aa0.17□□□□□ -2.38
LRIF1-203ENST00000494675 LRP1BQ9NZR2 4599 aa0.17□□□□□ -2.38
LRIF1-203ENST00000494675 A0A096LNI7 61 aa0.17□□□□□ -2.38
LRIF1-203ENST00000494675 NIPBLQ6KC79 2804 aaeCLIP0.16□□□□□ -2.38
LRIF1-203ENST00000494675 DNAH7Q8WXX0 4024 aa0.16□□□□□ -2.38
LRIF1-203ENST00000494675 WDFY3Q8IZQ1 3526 aa0.16□□□□□ -2.38
LRIF1-203ENST00000494675 LOC400499M0QZD8 3231 aa0.16□□□□□ -2.38
LRIF1-203ENST00000494675 LINC01590Q5TEZ4 76 aa0.15□□□□□ -2.39
LRIF1-203ENST00000494675 UTRNP46939 3433 aa0.15□□□□□ -2.39
LRIF1-203ENST00000494675 FAT3Q8TDW7 4589 aa0.15□□□□□ -2.39
LRIF1-203ENST00000494675 SMR3BP02814 79 aaPredicted RBP0.15□□□□□ -2.39
LRIF1-203ENST00000494675 SPEGQ15772 3267 aa0.14□□□□□ -2.39
LRIF1-203ENST00000494675 DNAH2Q9P225 4427 aa0.14□□□□□ -2.39
LRIF1-203ENST00000494675 SPRR2AP35326 72 aa0.14□□□□□ -2.39
LRIF1-203ENST00000494675 PRCDQ00LT1 54 aa0.14□□□□□ -2.39
LRIF1-203ENST00000494675 KRTAP8-1Q8IUC2 63 aa0.14□□□□□ -2.39
LRIF1-203ENST00000494675 LRP2P98164 4655 aa0.14□□□□□ -2.39
LRIF1-203ENST00000494675 MT1AP04731 61 aa0.13□□□□□ -2.39
LRIF1-203ENST00000494675 SPRR2EP22531 72 aa0.13□□□□□ -2.39
LRIF1-203ENST00000494675 DNAH1Q9P2D7 4330 aa0.13□□□□□ -2.39
LRIF1-203ENST00000494675 KRTAP19-5Q3LI72 72 aa0.13□□□□□ -2.39
LRIF1-203ENST00000494675 SPRR2FQ96RM1 72 aa0.13□□□□□ -2.39
LRIF1-203ENST00000494675 CEP295Q9C0D2 2601 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms