RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 LORP23490 312 aaPredicted RBP8.34□□□□□ -1.07
RNF40-203ENST00000493683 AKAP9Q99996 3911 aa8.33□□□□□ -1.08
RNF40-203ENST00000493683 CSMD3Q7Z407 3707 aa8.3□□□□□ -1.08
RNF40-203ENST00000493683 KRTAP8-1Q8IUC2 63 aa8.22□□□□□ -1.09
RNF40-203ENST00000493683 HUWE1Q7Z6Z7 4374 aaKnown RBP8.2□□□□□ -1.1
RNF40-203ENST00000493683 ALMS1Q8TCU4 4167 aa8.18□□□□□ -1.1
RNF40-203ENST00000493683 KRTAP10-5P60370 271 aa8.18□□□□□ -1.1
RNF40-203ENST00000493683 SPRR2GQ9BYE4 73 aa7.95□□□□□ -1.14
RNF40-203ENST00000493683 KRTAP19-4Q3LI73 84 aa7.89□□□□□ -1.15
RNF40-203ENST00000493683 DNAH10Q8IVF4 4471 aa7.89□□□□□ -1.15
RNF40-203ENST00000493683 MT1HP80294 61 aa7.86□□□□□ -1.15
RNF40-203ENST00000493683 DNAH2Q9P225 4427 aa7.86□□□□□ -1.15
RNF40-203ENST00000493683 KRTAP4-1Q9BYQ7 146 aa7.83□□□□□ -1.16
RNF40-203ENST00000493683 MT2AP02795 61 aa7.81□□□□□ -1.16
RNF40-203ENST00000493683 DNAH5Q8TE73 4624 aa7.73□□□□□ -1.17
RNF40-203ENST00000493683 DNAH11Q96DT5 4516 aa7.71□□□□□ -1.18
RNF40-203ENST00000493683 DNAH9Q9NYC9 4486 aa7.7□□□□□ -1.18
RNF40-203ENST00000493683 PLECQ15149 4684 aaKnown RBP7.69□□□□□ -1.18
RNF40-203ENST00000493683 DNAH1Q9P2D7 4330 aa7.69□□□□□ -1.18
RNF40-203ENST00000493683 LCE3CQ5T5A8 94 aa7.68□□□□□ -1.18
RNF40-203ENST00000493683 KRTAP10-7P60409 375 aaPredicted RBP7.65□□□□□ -1.18
RNF40-203ENST00000493683 KRTAP19-5Q3LI72 72 aa7.64□□□□□ -1.19
RNF40-203ENST00000493683 MT1FP04733 61 aa7.59□□□□□ -1.19
RNF40-203ENST00000493683 SPRR2FQ96RM1 72 aa7.57□□□□□ -1.2
RNF40-203ENST00000493683 DNAH8Q96JB1 4490 aa7.51□□□□□ -1.21
RNF40-203ENST00000493683 FAT1Q14517 4588 aa7.48□□□□□ -1.21
RNF40-203ENST00000493683 DNAH17Q9UFH2 4485 aa7.45□□□□□ -1.22
RNF40-203ENST00000493683 VPS13DQ5THJ4 4388 aa7.41□□□□□ -1.22
RNF40-203ENST00000493683 STARD9Q9P2P6 4700 aa7.39□□□□□ -1.23
RNF40-203ENST00000493683 DNAH3Q8TD57 4116 aa7.38□□□□□ -1.23
RNF40-203ENST00000493683 ANK2Q01484 3957 aa7.37□□□□□ -1.23
RNF40-203ENST00000493683 FRAS1Q86XX4 4008 aa7.37□□□□□ -1.23
RNF40-203ENST00000493683 KRTAP19-8Q3LI54 63 aa7.35□□□□□ -1.23
RNF40-203ENST00000493683 LYSTQ99698 3801 aa7.33□□□□□ -1.24
RNF40-203ENST00000493683 LRP1BQ9NZR2 4599 aa7.29□□□□□ -1.24
RNF40-203ENST00000493683 KMT2AQ03164 3969 aa7.28□□□□□ -1.24
RNF40-203ENST00000493683 DYNC1H1Q14204 4646 aaKnown RBP7.27□□□□□ -1.25
RNF40-203ENST00000493683 SACSQ9NZJ4 4579 aa7.25□□□□□ -1.25
RNF40-203ENST00000493683 KRTAP19-1Q8IUB9 90 aa7.18□□□□□ -1.26
RNF40-203ENST00000493683 CMYA5Q8N3K9 4069 aa7.18□□□□□ -1.26
RNF40-203ENST00000493683 RYR1P21817 5038 aa7.15□□□□□ -1.26
RNF40-203ENST00000493683 DYNC2H1Q8NCM8 4307 aaKnown RBP7.13□□□□□ -1.27
RNF40-203ENST00000493683 VPS13BQ7Z7G8 4022 aa7.12□□□□□ -1.27
RNF40-203ENST00000493683 DNHD1Q96M86 4753 aa7.11□□□□□ -1.27
RNF40-203ENST00000493683 FAT2Q9NYQ8 4349 aa7.11□□□□□ -1.27
RNF40-203ENST00000493683 DNAH7Q8WXX0 4024 aa7.1□□□□□ -1.27
RNF40-203ENST00000493683 PRKDCP78527 4128 aaKnown RBP7.1□□□□□ -1.27
RNF40-203ENST00000493683 SPRR2EP22531 72 aa7.09□□□□□ -1.27
RNF40-203ENST00000493683 SPRR2BP35325 72 aa7.09□□□□□ -1.27
RNF40-203ENST00000493683 SPRR2AP35326 72 aa7.09□□□□□ -1.27
RNF40-203ENST00000493683 MT1XP80297 61 aa7.07□□□□□ -1.28
RNF40-203ENST00000493683 SPRR5A0A1B0GTR4 108 aa7.06□□□□□ -1.28
RNF40-203ENST00000493683 HECTD4Q9Y4D8 3996 aa7.06□□□□□ -1.28
RNF40-203ENST00000493683 DNAH6Q9C0G6 4158 aa7.04□□□□□ -1.28
RNF40-203ENST00000493683 LRP1Q07954 4544 aaKnown RBP7.04□□□□□ -1.28
RNF40-203ENST00000493683 KRTAP12-4P60329 112 aa7□□□□□ -1.29
RNF40-203ENST00000493683 LCE3BQ5TA77 95 aa6.99□□□□□ -1.29
RNF40-203ENST00000493683 APOBP04114 4563 aaKnown RBP6.97□□□□□ -1.29
RNF40-203ENST00000493683 MT1BP07438 61 aa6.94□□□□□ -1.3
RNF40-203ENST00000493683 MT1GP13640 62 aa6.92□□□□□ -1.3
RNF40-203ENST00000493683 MYCBP2O75592 4640 aa6.9□□□□□ -1.3
RNF40-203ENST00000493683 SPRR2DP22532 72 aa6.89□□□□□ -1.31
RNF40-203ENST00000493683 HERC1Q15751 4861 aa6.89□□□□□ -1.31
RNF40-203ENST00000493683 LCE2BO14633 110 aa6.89□□□□□ -1.31
RNF40-203ENST00000493683 FAT3Q8TDW7 4589 aa6.88□□□□□ -1.31
RNF40-203ENST00000493683 KRTAP9-8Q9BYQ0 159 aa6.81□□□□□ -1.32
RNF40-203ENST00000493683 LCE3DQ9BYE3 92 aa6.79□□□□□ -1.32
RNF40-203ENST00000493683 RYR3Q15413 4870 aa6.79□□□□□ -1.32
RNF40-203ENST00000493683 HSPG2P98160 4391 aa6.76□□□□□ -1.33
RNF40-203ENST00000493683 LCE3EQ5T5B0 92 aa6.73□□□□□ -1.33
RNF40-203ENST00000493683 KRTAP9-3Q9BYQ3 159 aa6.7□□□□□ -1.34
RNF40-203ENST00000493683 HYDINQ4G0P3 5121 aa6.66□□□□□ -1.34
RNF40-203ENST00000493683 KRTAP4-8A0A0G2JLE6 195 aa6.64□□□□□ -1.35
RNF40-203ENST00000493683 KRTAP4-8Q9BYQ9 185 aa6.64□□□□□ -1.35
RNF40-203ENST00000493683 KRTAP17-1Q9BYP8 105 aa6.63□□□□□ -1.35
RNF40-203ENST00000493683 RYR2Q92736 4967 aa6.61□□□□□ -1.35
RNF40-203ENST00000493683 LCE2CQ5TA81 110 aa6.59□□□□□ -1.35
RNF40-203ENST00000493683 KIAA1109Q2LD37 5005 aa6.59□□□□□ -1.35
RNF40-203ENST00000493683 MT1LQ93083 61 aa6.58□□□□□ -1.36
RNF40-203ENST00000493683 KRTAP19-3Q7Z4W3 81 aa6.57□□□□□ -1.36
RNF40-203ENST00000493683 PKHD1P08F94 4074 aa6.55□□□□□ -1.36
RNF40-203ENST00000493683 PKD1P98161 4303 aa6.44□□□□□ -1.38
RNF40-203ENST00000493683 MT1EP04732 61 aa6.42□□□□□ -1.38
RNF40-203ENST00000493683 LRP2P98164 4655 aa6.42□□□□□ -1.38
RNF40-203ENST00000493683 LCE2DQ5TA82 110 aaPredicted RBP6.33□□□□□ -1.4
RNF40-203ENST00000493683 MT3P25713 68 aa6.3□□□□□ -1.4
RNF40-203ENST00000493683 PCLOQ9Y6V0 5065 aa6.29□□□□□ -1.4
RNF40-203ENST00000493683 PKHD1L1Q86WI1 4243 aa6.29□□□□□ -1.4
RNF40-203ENST00000493683 LPAP08519 4548 aa6.28□□□□□ -1.4
RNF40-203ENST00000493683 HERC2O95714 4834 aa6.27□□□□□ -1.41
RNF40-203ENST00000493683 KMT2CQ8NEZ4 4911 aaKnown RBP6.27□□□□□ -1.41
RNF40-203ENST00000493683 KRTAP4-7Q9BYR0 210 aa6.26□□□□□ -1.41
RNF40-203ENST00000493683 BIRC6Q9NR09 4857 aa6.24□□□□□ -1.41
RNF40-203ENST00000493683 MT1MQ8N339 61 aa6.23□□□□□ -1.41
RNF40-203ENST00000493683 KRTAP19-2Q3LHN2 52 aa6.21□□□□□ -1.41
RNF40-203ENST00000493683 TNXBP22105 4242 aa6.2□□□□□ -1.42
RNF40-203ENST00000493683 KRTAP19-6Q3LI70 58 aa6.15□□□□□ -1.42
RNF40-203ENST00000493683 EPPK1P58107 5090 aaKnown RBP6.14□□□□□ -1.43
RNF40-203ENST00000493683 PRM1P04553 51 aa6.13□□□□□ -1.43
RNF40-203ENST00000493683 SYNE1Q8NF91 8797 aaKnown RBP6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms