RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 MUC19Q7Z5P9 8384 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 ABCA13Q86UQ4 5058 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 TRAV22A0A0B4J277 110 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 H3BVH4 76 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 ARMS2P0C7Q2 107 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 C3orf79P0CE67 100 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 TMEM170BQ5T4T1 132 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 SMIM13P0DJ93 91 aa1.32□□□□□ -2.2
VPS13A-212ENST00000493341 BAGE2Q86Y30 109 aa1.32□□□□□ -2.2
VPS13A-212ENST00000493341 A0A0D9SG42 100 aa1.32□□□□□ -2.2
VPS13A-212ENST00000493341 H7BZZ5 65 aa1.32□□□□□ -2.2
VPS13A-212ENST00000493341 M0QY20 66 aa1.32□□□□□ -2.2
VPS13A-212ENST00000493341 PRO1854Q9UHT4 67 aa1.32□□□□□ -2.2
VPS13A-212ENST00000493341 ENHOQ6UWT2 76 aa1.31□□□□□ -2.2
VPS13A-212ENST00000493341 CDC42SE2Q9NRR3 84 aa1.31□□□□□ -2.2
VPS13A-212ENST00000493341 GNG13Q9P2W3 67 aa1.31□□□□□ -2.2
VPS13A-212ENST00000493341 TRBV25-1A0A075B6N4 114 aa1.3□□□□□ -2.2
VPS13A-212ENST00000493341 COX8AP10176 69 aa1.3□□□□□ -2.2
VPS13A-212ENST00000493341 Q5VSD8 79 aa1.3□□□□□ -2.2
VPS13A-212ENST00000493341 LINC01600Q96MT4 127 aa1.3□□□□□ -2.2
VPS13A-212ENST00000493341 AMELXQ99217 191 aa1.3□□□□□ -2.2
VPS13A-212ENST00000493341 FAT3Q8TDW7 4589 aa1.29□□□□□ -2.2
VPS13A-212ENST00000493341 SRRM2Q9UQ35 2752 aaKnown RBP1.29□□□□□ -2.2
VPS13A-212ENST00000493341 MYCBP2O75592 4640 aa1.29□□□□□ -2.2
VPS13A-212ENST00000493341 POLR2KP53803 58 aaKnown RBP1.29□□□□□ -2.2
VPS13A-212ENST00000493341 A0A1B0GUT8 65 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 SMIM27A0A1W2PRY6 76 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 I3L3M4 83 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 UQCR11O14957 56 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 MGPP08493 103 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 FAT1Q14517 4588 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 DEFB104AQ8WTQ1 72 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 PLAC8Q9NZF1 115 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 LINC01558Q9Y6Z2 57 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 COX6CP09669 75 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 LINC00643Q86TS7 51 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 RPL39LQ96EH5 51 aaKnown RBP1.28□□□□□ -2.2
VPS13A-212ENST00000493341 CRCT1Q9UGL9 99 aa1.28□□□□□ -2.2
VPS13A-212ENST00000493341 LINC00959A0A1B0GUT2 108 aa1.27□□□□□ -2.21
VPS13A-212ENST00000493341 F8WEM9 126 aa1.27□□□□□ -2.21
VPS13A-212ENST00000493341 SMR3BP02814 79 aaPredicted RBP1.27□□□□□ -2.21
VPS13A-212ENST00000493341 K7EMI3 77 aa1.27□□□□□ -2.21
VPS13A-212ENST00000493341 MT1HL1P0DM35 61 aa1.27□□□□□ -2.21
VPS13A-212ENST00000493341 SMIM2Q9BVW6 85 aa1.27□□□□□ -2.21
VPS13A-212ENST00000493341 UBE2D4Q9Y2X8 147 aa1.27□□□□□ -2.21
VPS13A-212ENST00000493341 TNXBP22105 4242 aa1.26□□□□□ -2.21
VPS13A-212ENST00000493341 DMBT1Q9UGM3 2413 aaPredicted RBP1.26□□□□□ -2.21
VPS13A-212ENST00000493341 LINC01546A6NGU7 62 aa1.26□□□□□ -2.21
VPS13A-212ENST00000493341 HAMPP81172 84 aa1.26□□□□□ -2.21
VPS13A-212ENST00000493341 CLPSL2Q6UWE3 100 aa1.26□□□□□ -2.21
VPS13A-212ENST00000493341 HERC1Q15751 4861 aa1.26□□□□□ -2.21
VPS13A-212ENST00000493341 COX17Q14061 63 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 LRP1Q07954 4544 aaKnown RBP1.25□□□□□ -2.21
VPS13A-212ENST00000493341 A0A096LNI7 61 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 MYMXA0A1B0GTQ4 84 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 LINC01549A6NIU2 74 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 D6R8Y8 96 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 NDUFC1O43677 76 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 ACYP1P07311 99 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 FCER1GP30273 86 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 COX6A2Q02221 97 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 SPINK6Q6UWN8 80 aa1.25□□□□□ -2.21
VPS13A-212ENST00000493341 IGIPA6NJ69 53 aa1.24□□□□□ -2.21
VPS13A-212ENST00000493341 HMCN2Q8NDA2 5059 aa1.24□□□□□ -2.21
VPS13A-212ENST00000493341 A0A087WVE0 104 aa1.23□□□□□ -2.21
VPS13A-212ENST00000493341 NDUFA1O15239 70 aa1.23□□□□□ -2.21
VPS13A-212ENST00000493341 IFI27P40305 119 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-212ENST00000493341 RPL39P62891 51 aaKnown RBP1.23□□□□□ -2.21
VPS13A-212ENST00000493341 Q8IZM0 81 aa1.23□□□□□ -2.21
VPS13A-212ENST00000493341 C10orf95Q9H7T3 257 aa1.23□□□□□ -2.21
VPS13A-212ENST00000493341 Q6JHZ5 121 aa1.23□□□□□ -2.21
VPS13A-212ENST00000493341 C6orf48Q9UBA6 75 aa1.23□□□□□ -2.21
VPS13A-212ENST00000493341 BCE1O60756 84 aa1.22□□□□□ -2.21
VPS13A-212ENST00000493341 ZNF815PA8K554 130 aa1.22□□□□□ -2.21
VPS13A-212ENST00000493341 LINC00472Q9H8W2 130 aa1.21□□□□□ -2.22
VPS13A-212ENST00000493341 CDKN2A-AS1Q9UH64 79 aa1.21□□□□□ -2.22
VPS13A-212ENST00000493341 LEPROTL1O95214 131 aa1.2□□□□□ -2.22
VPS13A-212ENST00000493341 TRBV7-4A0A0J9YYF1 115 aa1.2□□□□□ -2.22
VPS13A-212ENST00000493341 ATXN8Q156A1 80 aa1.2□□□□□ -2.22
VPS13A-212ENST00000493341 KRTAP21-2Q3LI59 83 aa1.19□□□□□ -2.22
VPS13A-212ENST00000493341 SPRR1AP35321 89 aa1.18□□□□□ -2.22
VPS13A-212ENST00000493341 SPINK7P58062 85 aa1.18□□□□□ -2.22
VPS13A-212ENST00000493341 SSBP3-AS1Q7Z2R9 100 aa1.18□□□□□ -2.22
VPS13A-212ENST00000493341 MUSTN1Q8IVN3 82 aa1.18□□□□□ -2.22
VPS13A-212ENST00000493341 TOMM7Q9P0U1 55 aa1.18□□□□□ -2.22
VPS13A-212ENST00000493341 MUC17Q685J3 4493 aa1.18□□□□□ -2.22
VPS13A-212ENST00000493341 LRP2P98164 4655 aa1.17□□□□□ -2.22
VPS13A-212ENST00000493341 KCNQ1DNQ9H478 68 aa1.17□□□□□ -2.22
VPS13A-212ENST00000493341 RNF213Q63HN8 5207 aa1.17□□□□□ -2.22
VPS13A-212ENST00000493341 PLNP26678 52 aa1.16□□□□□ -2.22
VPS13A-212ENST00000493341 RPS29P62273 56 aaKnown RBP1.16□□□□□ -2.22
VPS13A-212ENST00000493341 SPRR4Q96PI1 79 aa1.16□□□□□ -2.22
VPS13A-212ENST00000493341 UBR4Q5T4S7 5183 aa1.16□□□□□ -2.22
VPS13A-212ENST00000493341 ATP5EP2Q5VTU8 51 aa1.16□□□□□ -2.22
VPS13A-212ENST00000493341 LINC00846Q9NV44 126 aa1.16□□□□□ -2.22
VPS13A-212ENST00000493341 SPRR1BP22528 89 aa1.15□□□□□ -2.22
VPS13A-212ENST00000493341 LINC00158P58513 81 aa1.15□□□□□ -2.22
VPS13A-212ENST00000493341 LPAP08519 4548 aa1.15□□□□□ -2.23
VPS13A-212ENST00000493341 PRLHP81277 87 aa1.15□□□□□ -2.23
VPS13A-212ENST00000493341 SPATA8Q6RVD6 105 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms