RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DEFB114Q30KQ6 69 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 KRTAP13-2Q52LG2 175 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 Q6ZQY7 126 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 UBE2DNLQ8IWF7 75 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 C9orf163Q8N9P6 203 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 TOMM7Q9P0U1 55 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 MINOS1-NBL1R4GNA1 71 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 FAT3Q8TDW7 4589 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 DSCAML1Q8TD84 2053 aa1.11□□□□□ -2.23
HMGB1-208ENST00000490788 IGKV3-7A0A075B6H7 116 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 A0A087WSZ3 146 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 IGKV3OR2-268A0A0C4DH90 116 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 H3BPC8 53 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 UQCR11O14957 56 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 MRPL33O75394 65 aaKnown RBP1.1□□□□□ -2.23
HMGB1-208ENST00000490788 HRES1P13985 223 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 DEFB1P60022 68 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 KRTAP26-1Q6PEX3 210 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 SPINT4Q6UDR6 99 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 SPRR4Q96PI1 79 aa1.1□□□□□ -2.23
HMGB1-208ENST00000490788 IGLV10-54A0A075B6I4 117 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 A0A1B0GU69 56 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 ODF3BA8MYP8 253 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 K7EQZ3 153 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 CCL3L1P16619 93 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 PCOTHQ58A44 107 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 C1orf137Q5JT78 98 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 WFDC10BQ8IUB3 73 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 WFDC13Q8IUB5 93 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 Q8IZM0 81 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 RNF5Q99942 180 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 APLNQ9ULZ1 77 aa1.09□□□□□ -2.23
HMGB1-208ENST00000490788 ARHGAP32A7KAX9 2087 aa1.09□□□□□ -2.24
HMGB1-208ENST00000490788 SORL1Q92673 2214 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 A0A087WTM6 91 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 IGKV2-24A0A0C4DH68 120 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 DEFB136Q30KP8 78 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 KRTAP6-3Q3LI67 103 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 LINC00304Q8N9R0 145 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 DMAC1Q96GE9 116 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 LINC00472Q9H8W2 130 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 CRIPTQ9P021 101 aa1.08□□□□□ -2.24
HMGB1-208ENST00000490788 LRP1Q07954 4544 aaKnown RBP1.08□□□□□ -2.24
HMGB1-208ENST00000490788 TRGV1A0A0A0MS02 117 aa1.07□□□□□ -2.24
HMGB1-208ENST00000490788 SSBP3-AS1Q7Z2R9 100 aa1.07□□□□□ -2.24
HMGB1-208ENST00000490788 DEFB105AQ8NG35 78 aa1.07□□□□□ -2.24
HMGB1-208ENST00000490788 DEFB131BA0A096LNP1 70 aa1.06□□□□□ -2.24
HMGB1-208ENST00000490788 IGLV6-57P01721 117 aa1.06□□□□□ -2.24
HMGB1-208ENST00000490788 KRTAP2-3P0C7H8 128 aa1.06□□□□□ -2.24
HMGB1-208ENST00000490788 HTN1P15515 57 aa1.06□□□□□ -2.24
HMGB1-208ENST00000490788 C10orf99Q6UWK7 81 aa1.06□□□□□ -2.24
HMGB1-208ENST00000490788 Q96NJ1 140 aa1.06□□□□□ -2.24
HMGB1-208ENST00000490788 KRTAP2-4Q9BYR9 128 aa1.06□□□□□ -2.24
HMGB1-208ENST00000490788 KAAG1Q9UBP8 84 aa1.06□□□□□ -2.24
HMGB1-208ENST00000490788 LPAP08519 4548 aa1.05□□□□□ -2.24
HMGB1-208ENST00000490788 MT1HL1P0DM35 61 aa1.05□□□□□ -2.24
HMGB1-208ENST00000490788 RPL37AP61513 92 aaKnown RBP1.05□□□□□ -2.24
HMGB1-208ENST00000490788 SPINK13Q1W4C9 94 aa1.05□□□□□ -2.24
HMGB1-208ENST00000490788 TNXBP22105 4242 aa1.04□□□□□ -2.24
HMGB1-208ENST00000490788 IGLV5-48A0A075B6I7 105 aa1.04□□□□□ -2.24
HMGB1-208ENST00000490788 NBDYA0A0U1RRE5 68 aa1.04□□□□□ -2.24
HMGB1-208ENST00000490788 IGLV7-43P04211 117 aa1.04□□□□□ -2.24
HMGB1-208ENST00000490788 COX17Q14061 63 aa1.04□□□□□ -2.24
HMGB1-208ENST00000490788 MINOS1Q5TGZ0 78 aa1.04□□□□□ -2.24
HMGB1-208ENST00000490788 A0A0G2JQZ4 141 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 A0A1W2PNN7 141 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 ANGP03950 147 aaKnown RBP1.03□□□□□ -2.24
HMGB1-208ENST00000490788 ACYP2P14621 99 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 TPRXLQ17RH7 258 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 DEFB135Q30KP9 77 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 UNQ6190/PRO20217Q6UXQ8 127 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 Q6ZRX8 168 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 KRTAP13-1Q8IUC0 172 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 RHPN1-AS1Q9BWJ2 59 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 C6orf48Q9UBA6 75 aa1.03□□□□□ -2.24
HMGB1-208ENST00000490788 USH2AO75445 5202 aa1.02□□□□□ -2.25
HMGB1-208ENST00000490788 MMP24-AS1A0A0U1RRL7 71 aa1.02□□□□□ -2.25
HMGB1-208ENST00000490788 G3V318 75 aa1.02□□□□□ -2.25
HMGB1-208ENST00000490788 CLPSL2Q6UWE3 100 aa1.02□□□□□ -2.25
HMGB1-208ENST00000490788 C5orf56Q8N8D9 126 aa1.02□□□□□ -2.25
HMGB1-208ENST00000490788 TP53AIP1Q9HCN2 124 aa1.02□□□□□ -2.25
HMGB1-208ENST00000490788 PSORS1C2Q9UIG4 136 aa1.02□□□□□ -2.25
HMGB1-208ENST00000490788 DEFB4AO15263 64 aa1.01□□□□□ -2.25
HMGB1-208ENST00000490788 KLK9Q2XQG4 91 aa1.01□□□□□ -2.25
HMGB1-208ENST00000490788 C4orf3Q8WVX3 66 aa1.01□□□□□ -2.25
HMGB1-208ENST00000490788 TNCP24821 2201 aa1.01□□□□□ -2.25
HMGB1-208ENST00000490788 FCGBPQ9Y6R7 5405 aaPredicted RBP1□□□□□ -2.25
HMGB1-208ENST00000490788 A0A1B0GU33 70 aa1□□□□□ -2.25
HMGB1-208ENST00000490788 H0YAA0 97 aa1□□□□□ -2.25
HMGB1-208ENST00000490788 KRTAP12-3P60328 96 aa1□□□□□ -2.25
HMGB1-208ENST00000490788 KRTAP2-1Q9BYU5 128 aa1□□□□□ -2.25
HMGB1-208ENST00000490788 M0R2T5 61 aa0.99□□□□□ -2.25
HMGB1-208ENST00000490788 Q6ZSA8 131 aa0.99□□□□□ -2.25
HMGB1-208ENST00000490788 C10orf95Q9H7T3 257 aa0.99□□□□□ -2.25
HMGB1-208ENST00000490788 KMT2DO14686 5537 aa0.99□□□□□ -2.25
HMGB1-208ENST00000490788 GVQW2A0A096LPI5 108 aaPredicted RBP0.98□□□□□ -2.25
HMGB1-208ENST00000490788 DEFB130BP0DP73 79 aa0.98□□□□□ -2.25
HMGB1-208ENST00000490788 DEFB130AP0DP74 79 aa0.98□□□□□ -2.25
HMGB1-208ENST00000490788 DEFB131AP59861 70 aa0.98□□□□□ -2.25
HMGB1-208ENST00000490788 KRTAP10-4P60372 401 aaPredicted RBP0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms