RNA–Protein interactions for RNA: ENST00000485749.1

RTN4-213, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 832 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-213ENST00000485749 PDZD2O15018 2839 aa1.92□□□□□ -2.1
RTN4-213ENST00000485749 NIPBLQ6KC79 2804 aaeCLIP1.92□□□□□ -2.1
RTN4-213ENST00000485749 KRTAP10-10P60014 251 aa1.91□□□□□ -2.1
RTN4-213ENST00000485749 HIVEP1P15822 2718 aa1.91□□□□□ -2.1
RTN4-213ENST00000485749 MTORP42345 2549 aa1.91□□□□□ -2.1
RTN4-213ENST00000485749 SETD2Q9BYW2 2564 aaPredicted RBP1.91□□□□□ -2.1
RTN4-213ENST00000485749 FLG2Q5D862 2391 aaPredicted RBP1.9□□□□□ -2.11
RTN4-213ENST00000485749 KRTAP12-1P59990 96 aa1.9□□□□□ -2.11
RTN4-213ENST00000485749 USP24Q9UPU5 2620 aa1.9□□□□□ -2.11
RTN4-213ENST00000485749 ACANP16112 2415 aa1.89□□□□□ -2.11
RTN4-213ENST00000485749 CUBNO60494 3623 aa1.89□□□□□ -2.11
RTN4-213ENST00000485749 NF1P21359 2839 aa1.89□□□□□ -2.11
RTN4-213ENST00000485749 S4R3F8 94 aa1.89□□□□□ -2.11
RTN4-213ENST00000485749 ZNF469Q96JG9 3925 aaPredicted RBP1.89□□□□□ -2.11
RTN4-213ENST00000485749 CENPEQ02224 2701 aa1.89□□□□□ -2.11
RTN4-213ENST00000485749 HUWE1Q7Z6Z7 4374 aaKnown RBP1.87□□□□□ -2.11
RTN4-213ENST00000485749 BAHCC1Q9P281 2608 aa1.87□□□□□ -2.11
RTN4-213ENST00000485749 VWFP04275 2813 aa1.86□□□□□ -2.11
RTN4-213ENST00000485749 F8P00451 2351 aa1.86□□□□□ -2.11
RTN4-213ENST00000485749 TEP1Q99973 2627 aaKnown RBP1.85□□□□□ -2.11
RTN4-213ENST00000485749 LCE3DQ9BYE3 92 aa1.85□□□□□ -2.11
RTN4-213ENST00000485749 FASNP49327 2511 aaKnown RBP1.85□□□□□ -2.11
RTN4-213ENST00000485749 TENM2Q9NT68 2774 aa1.84□□□□□ -2.11
RTN4-213ENST00000485749 NSD1Q96L73 2696 aaPredicted RBP1.84□□□□□ -2.11
RTN4-213ENST00000485749 ATRQ13535 2644 aa1.84□□□□□ -2.12
RTN4-213ENST00000485749 MAST4O15021 2626 aa1.83□□□□□ -2.12
RTN4-213ENST00000485749 TENM3Q9P273 2699 aa1.83□□□□□ -2.12
RTN4-213ENST00000485749 C9orf92A6NGG3 77 aa1.83□□□□□ -2.12
RTN4-213ENST00000485749 DNAH3Q8TD57 4116 aa1.83□□□□□ -2.12
RTN4-213ENST00000485749 DNAH10Q8IVF4 4471 aa1.83□□□□□ -2.12
RTN4-213ENST00000485749 OTOGQ6ZRI0 2925 aa1.83□□□□□ -2.12
RTN4-213ENST00000485749 DYNC2H1Q8NCM8 4307 aaKnown RBP1.82□□□□□ -2.12
RTN4-213ENST00000485749 ANK2Q01484 3957 aa1.82□□□□□ -2.12
RTN4-213ENST00000485749 VPS13DQ5THJ4 4388 aa1.82□□□□□ -2.12
RTN4-213ENST00000485749 DNAH8Q96JB1 4490 aa1.82□□□□□ -2.12
RTN4-213ENST00000485749 TENM1Q9UKZ4 2725 aa1.82□□□□□ -2.12
RTN4-213ENST00000485749 TENM4Q6N022 2769 aa1.82□□□□□ -2.12
RTN4-213ENST00000485749 A0A0D9SG42 100 aa1.81□□□□□ -2.12
RTN4-213ENST00000485749 HECTD1Q9ULT8 2610 aa1.81□□□□□ -2.12
RTN4-213ENST00000485749 DNAH9Q9NYC9 4486 aa1.81□□□□□ -2.12
RTN4-213ENST00000485749 M0QZ58 72 aa1.8□□□□□ -2.12
RTN4-213ENST00000485749 MUC19Q7Z5P9 8384 aa1.8□□□□□ -2.12
RTN4-213ENST00000485749 TRRAPQ9Y4A5 3859 aa1.8□□□□□ -2.12
RTN4-213ENST00000485749 PKD1L1Q8TDX9 2849 aa1.8□□□□□ -2.12
RTN4-213ENST00000485749 DNAH17Q9UFH2 4485 aa1.79□□□□□ -2.12
RTN4-213ENST00000485749 FLNBO75369 2602 aaKnown RBP1.79□□□□□ -2.12
RTN4-213ENST00000485749 ITPR2Q14571 2701 aa1.79□□□□□ -2.12
RTN4-213ENST00000485749 SRRM2Q9UQ35 2752 aaKnown RBP1.78□□□□□ -2.12
RTN4-213ENST00000485749 CMYA5Q8N3K9 4069 aa1.76□□□□□ -2.13
RTN4-213ENST00000485749 HELZ2Q9BYK8 2649 aaKnown RBP1.76□□□□□ -2.13
RTN4-213ENST00000485749 KRTAP6-3Q3LI67 103 aa1.75□□□□□ -2.13
RTN4-213ENST00000485749 FBN1P35555 2871 aaKnown RBP1.75□□□□□ -2.13
RTN4-213ENST00000485749 KRTAP12-4P60329 112 aa1.74□□□□□ -2.13
RTN4-213ENST00000485749 NBEAL1Q6ZS30 2694 aa1.73□□□□□ -2.13
RTN4-213ENST00000485749 DNAH2Q9P225 4427 aa1.73□□□□□ -2.13
RTN4-213ENST00000485749 STAB2Q8WWQ8 2551 aa1.73□□□□□ -2.13
RTN4-213ENST00000485749 PRKDCP78527 4128 aaKnown RBP1.73□□□□□ -2.13
RTN4-213ENST00000485749 LYSTQ99698 3801 aa1.73□□□□□ -2.13
RTN4-213ENST00000485749 FRAS1Q86XX4 4008 aa1.73□□□□□ -2.13
RTN4-213ENST00000485749 PLECQ15149 4684 aaKnown RBP1.72□□□□□ -2.13
RTN4-213ENST00000485749 SMR3BP02814 79 aaPredicted RBP1.72□□□□□ -2.13
RTN4-213ENST00000485749 DNAH11Q96DT5 4516 aa1.72□□□□□ -2.13
RTN4-213ENST00000485749 NOTCH1P46531 2555 aa1.72□□□□□ -2.13
RTN4-213ENST00000485749 TGP01266 2768 aa1.71□□□□□ -2.14
RTN4-213ENST00000485749 DNAH6Q9C0G6 4158 aa1.71□□□□□ -2.14
RTN4-213ENST00000485749 STAB1Q9NY15 2570 aa1.71□□□□□ -2.14
RTN4-213ENST00000485749 KRTAP10-4P60372 401 aaPredicted RBP1.71□□□□□ -2.14
RTN4-213ENST00000485749 KRTAP5-7Q6L8G8 165 aa1.71□□□□□ -2.14
RTN4-213ENST00000485749 DNAH7Q8WXX0 4024 aa1.7□□□□□ -2.14
RTN4-213ENST00000485749 COL6A5A8TX70 2615 aa1.69□□□□□ -2.14
RTN4-213ENST00000485749 CSMD3Q7Z407 3707 aa1.69□□□□□ -2.14
RTN4-213ENST00000485749 COL7A1Q02388 2944 aa1.69□□□□□ -2.14
RTN4-213ENST00000485749 MGAM2Q2M2H8 2515 aa1.69□□□□□ -2.14
RTN4-213ENST00000485749 SACSQ9NZJ4 4579 aa1.69□□□□□ -2.14
RTN4-213ENST00000485749 LRP1BQ9NZR2 4599 aa1.68□□□□□ -2.14
RTN4-213ENST00000485749 HECTD4Q9Y4D8 3996 aa1.68□□□□□ -2.14
RTN4-213ENST00000485749 STARD9Q9P2P6 4700 aa1.67□□□□□ -2.14
RTN4-213ENST00000485749 MEGF8Q7Z7M0 2845 aa1.67□□□□□ -2.14
RTN4-213ENST00000485749 DNAH5Q8TE73 4624 aa1.66□□□□□ -2.14
RTN4-213ENST00000485749 PKHD1L1Q86WI1 4243 aa1.66□□□□□ -2.14
RTN4-213ENST00000485749 FBN3Q75N90 2809 aa1.65□□□□□ -2.15
RTN4-213ENST00000485749 FAT2Q9NYQ8 4349 aa1.63□□□□□ -2.15
RTN4-213ENST00000485749 VPS13BQ7Z7G8 4022 aa1.63□□□□□ -2.15
RTN4-213ENST00000485749 KMT2AQ03164 3969 aa1.63□□□□□ -2.15
RTN4-213ENST00000485749 PKD1P98161 4303 aa1.61□□□□□ -2.15
RTN4-213ENST00000485749 KRTAP21-3Q3LHN1 58 aa1.61□□□□□ -2.15
RTN4-213ENST00000485749 PKHD1P08F94 4074 aa1.6□□□□□ -2.15
RTN4-213ENST00000485749 TNP1P09430 55 aa1.59□□□□□ -2.15
RTN4-213ENST00000485749 APOBP04114 4563 aaKnown RBP1.59□□□□□ -2.16
RTN4-213ENST00000485749 DMBT1Q9UGM3 2413 aaPredicted RBP1.58□□□□□ -2.16
RTN4-213ENST00000485749 MT1HL1P0DM35 61 aa1.57□□□□□ -2.16
RTN4-213ENST00000485749 TNXBP22105 4242 aa1.56□□□□□ -2.16
RTN4-213ENST00000485749 DYNC1H1Q14204 4646 aaKnown RBP1.56□□□□□ -2.16
RTN4-213ENST00000485749 LRP1Q07954 4544 aaKnown RBP1.56□□□□□ -2.16
RTN4-213ENST00000485749 FAT3Q8TDW7 4589 aa1.56□□□□□ -2.16
RTN4-213ENST00000485749 KRTAP12-3P60328 96 aa1.55□□□□□ -2.16
RTN4-213ENST00000485749 HSPG2P98160 4391 aa1.54□□□□□ -2.16
RTN4-213ENST00000485749 HYDINQ4G0P3 5121 aa1.53□□□□□ -2.16
RTN4-213ENST00000485749 FAT1Q14517 4588 aa1.53□□□□□ -2.16
RTN4-213ENST00000485749 M0R2T5 61 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms