RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 KRTAP23-1A1A580 65 aa2.26□□□□□ -2.05
USP4-209ENST00000475873 D6R8Y8 96 aa2.26□□□□□ -2.05
USP4-209ENST00000475873 MUSTN1Q8IVN3 82 aa2.26□□□□□ -2.05
USP4-209ENST00000475873 Q9BRP9 147 aa2.26□□□□□ -2.05
USP4-209ENST00000475873 OCR1Q9BZK8 76 aa2.26□□□□□ -2.05
USP4-209ENST00000475873 CDKN2A-AS1Q9UH64 79 aa2.26□□□□□ -2.05
USP4-209ENST00000475873 IGLV5-39A0A0G2JS06 123 aa2.25□□□□□ -2.05
USP4-209ENST00000475873 ROMO1P60602 79 aa2.25□□□□□ -2.05
USP4-209ENST00000475873 C2orf66Q6UXQ4 117 aa2.25□□□□□ -2.05
USP4-209ENST00000475873 PRR15LQ9BU68 103 aa2.25□□□□□ -2.05
USP4-209ENST00000475873 TRBV7-4A0A0J9YYF1 115 aa2.24□□□□□ -2.05
USP4-209ENST00000475873 SMIM1B2RUZ4 78 aa2.24□□□□□ -2.05
USP4-209ENST00000475873 H7C2G1 150 aa2.24□□□□□ -2.05
USP4-209ENST00000475873 KRTAP5-10Q6L8G5 202 aa2.24□□□□□ -2.05
USP4-209ENST00000475873 C1orf64Q8NEQ6 169 aa2.24□□□□□ -2.05
USP4-209ENST00000475873 TMEM254Q8TBM7 123 aa2.24□□□□□ -2.05
USP4-209ENST00000475873 C14orf132Q9NPU4 83 aa2.24□□□□□ -2.05
USP4-209ENST00000475873 HMCN1Q96RW7 5635 aa2.23□□□□□ -2.05
USP4-209ENST00000475873 A0A0G2JQZ4 141 aa2.23□□□□□ -2.05
USP4-209ENST00000475873 C11orf86A6NJI1 115 aa2.23□□□□□ -2.05
USP4-209ENST00000475873 A8MU10 97 aa2.23□□□□□ -2.05
USP4-209ENST00000475873 HRES1P13985 223 aa2.23□□□□□ -2.05
USP4-209ENST00000475873 NREPQ16612 68 aa2.23□□□□□ -2.05
USP4-209ENST00000475873 SMIM29Q86T20 159 aa2.23□□□□□ -2.05
USP4-209ENST00000475873 AMELXQ99217 191 aa2.23□□□□□ -2.05
USP4-209ENST00000475873 BAALC-AS2P0C853 105 aa2.22□□□□□ -2.05
USP4-209ENST00000475873 ST20-AS1Q8NBB2 130 aa2.22□□□□□ -2.05
USP4-209ENST00000475873 COX7B2Q8TF08 81 aa2.22□□□□□ -2.05
USP4-209ENST00000475873 SMIM2Q9BVW6 85 aa2.22□□□□□ -2.05
USP4-209ENST00000475873 KCNQ1DNQ9H478 68 aa2.22□□□□□ -2.05
USP4-209ENST00000475873 A0A096LNJ9 63 aa2.21□□□□□ -2.06
USP4-209ENST00000475873 HIGD1CA8MV81 97 aa2.21□□□□□ -2.06
USP4-209ENST00000475873 CAMK2N1Q7Z7J9 78 aa2.21□□□□□ -2.06
USP4-209ENST00000475873 OBSCN-AS1Q96MR7 158 aa2.21□□□□□ -2.06
USP4-209ENST00000475873 A0A1B0GUT8 65 aa2.2□□□□□ -2.06
USP4-209ENST00000475873 LOC101927531A0A1B0GV80 90 aa2.2□□□□□ -2.06
USP4-209ENST00000475873 ETDCA0A1B0GVM5 59 aa2.2□□□□□ -2.06
USP4-209ENST00000475873 A0A1B0GVX0 72 aa2.2□□□□□ -2.06
USP4-209ENST00000475873 Q6ZQT0 140 aa2.2□□□□□ -2.06
USP4-209ENST00000475873 UBL5Q9BZL1 73 aa2.2□□□□□ -2.06
USP4-209ENST00000475873 ORMDL1Q9P0S3 153 aa2.2□□□□□ -2.06
USP4-209ENST00000475873 TRAV12-1A0A0B4J245 112 aa2.19□□□□□ -2.06
USP4-209ENST00000475873 BPY2O14599 106 aa2.19□□□□□ -2.06
USP4-209ENST00000475873 ELOF1P60002 83 aaKnown RBP2.19□□□□□ -2.06
USP4-209ENST00000475873 MIR22HGQ0VDD5 57 aa2.19□□□□□ -2.06
USP4-209ENST00000475873 KRTAP5-7Q6L8G8 165 aa2.19□□□□□ -2.06
USP4-209ENST00000475873 IGIPA6NJ69 53 aa2.18□□□□□ -2.06
USP4-209ENST00000475873 PPP1R17O96001 155 aa2.18□□□□□ -2.06
USP4-209ENST00000475873 CSAG1Q6PB30 78 aa2.18□□□□□ -2.06
USP4-209ENST00000475873 Q6ZRX8 168 aa2.18□□□□□ -2.06
USP4-209ENST00000475873 LINC01546A6NGU7 62 aa2.17□□□□□ -2.06
USP4-209ENST00000475873 NCR3O14931 201 aa2.17□□□□□ -2.06
USP4-209ENST00000475873 SPRR1BP22528 89 aa2.17□□□□□ -2.06
USP4-209ENST00000475873 ZNF625Q96I27 306 aaPredicted RBP2.17□□□□□ -2.06
USP4-209ENST00000475873 A8MUU9 505 aa2.16□□□□□ -2.06
USP4-209ENST00000475873 NDUFB1O75438 58 aa2.16□□□□□ -2.06
USP4-209ENST00000475873 KRTAP19-8Q3LI54 63 aa2.16□□□□□ -2.06
USP4-209ENST00000475873 MIR7-3HGQ8N6C7 128 aa2.16□□□□□ -2.06
USP4-209ENST00000475873 A0A087WSZ3 146 aa2.15□□□□□ -2.07
USP4-209ENST00000475873 H3BPC8 53 aa2.15□□□□□ -2.07
USP4-209ENST00000475873 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.15□□□□□ -2.07
USP4-209ENST00000475873 LINC00208Q96KT6 92 aa2.15□□□□□ -2.07
USP4-209ENST00000475873 A0A1W2PNM2 257 aa2.14□□□□□ -2.07
USP4-209ENST00000475873 H3BQ85 93 aa2.13□□□□□ -2.07
USP4-209ENST00000475873 P0C880 135 aa2.13□□□□□ -2.07
USP4-209ENST00000475873 COX17Q14061 63 aa2.13□□□□□ -2.07
USP4-209ENST00000475873 IGFL1Q6UW32 110 aa2.13□□□□□ -2.07
USP4-209ENST00000475873 KRTAP8-1Q8IUC2 63 aa2.13□□□□□ -2.07
USP4-209ENST00000475873 Q96NJ1 140 aa2.13□□□□□ -2.07
USP4-209ENST00000475873 SPRR5A0A1B0GTR4 108 aa2.12□□□□□ -2.07
USP4-209ENST00000475873 NDUFAF8A1L188 74 aa2.12□□□□□ -2.07
USP4-209ENST00000475873 JMJD7-PLA2G4BH0Y9G9 81 aa2.12□□□□□ -2.07
USP4-209ENST00000475873 H0Y9P7 68 aa2.12□□□□□ -2.07
USP4-209ENST00000475873 DMAC1Q96GE9 116 aa2.12□□□□□ -2.07
USP4-209ENST00000475873 LINC01558Q9Y6Z2 57 aa2.11□□□□□ -2.07
USP4-209ENST00000475873 LINC00158P58513 81 aa2.1□□□□□ -2.07
USP4-209ENST00000475873 KRTAP25-1Q3LHN0 102 aa2.1□□□□□ -2.07
USP4-209ENST00000475873 SPANXA2-OT1Q8N9U9 137 aa2.1□□□□□ -2.07
USP4-209ENST00000475873 PDE6GP18545 87 aa2.09□□□□□ -2.07
USP4-209ENST00000475873 SPRR2GQ9BYE4 73 aa2.09□□□□□ -2.07
USP4-209ENST00000475873 UQCR11O14957 56 aa2.08□□□□□ -2.08
USP4-209ENST00000475873 SPINK7P58062 85 aa2.08□□□□□ -2.08
USP4-209ENST00000475873 ZCCHC13Q8WW36 166 aaKnown RBP2.08□□□□□ -2.08
USP4-209ENST00000475873 LOC110117498A0A087WWA1 95 aa2.06□□□□□ -2.08
USP4-209ENST00000475873 H0YGX0 51 aa2.06□□□□□ -2.08
USP4-209ENST00000475873 MT4P47944 62 aa2.06□□□□□ -2.08
USP4-209ENST00000475873 SPINT4Q6UDR6 99 aa2.06□□□□□ -2.08
USP4-209ENST00000475873 COA5Q86WW8 74 aa2.06□□□□□ -2.08
USP4-209ENST00000475873 DEFB116Q30KQ4 102 aa2.05□□□□□ -2.08
USP4-209ENST00000475873 DEFB105AQ8NG35 78 aa2.05□□□□□ -2.08
USP4-209ENST00000475873 LITAFQ99732 161 aa2.05□□□□□ -2.08
USP4-209ENST00000475873 A0A1B0GU33 70 aa2.04□□□□□ -2.08
USP4-209ENST00000475873 DSCR10P59022 87 aa2.04□□□□□ -2.08
USP4-209ENST00000475873 KRTAP19-4Q3LI73 84 aa2.04□□□□□ -2.08
USP4-209ENST00000475873 IGKV4-1P06312 121 aa2.03□□□□□ -2.08
USP4-209ENST00000475873 MT1XP80297 61 aa2.02□□□□□ -2.09
USP4-209ENST00000475873 Q5W150 140 aa2.02□□□□□ -2.09
USP4-209ENST00000475873 IGLV5-48A0A075B6I7 105 aa2.01□□□□□ -2.09
USP4-209ENST00000475873 SPATA8Q6RVD6 105 aa2.01□□□□□ -2.09
USP4-209ENST00000475873 LINC00308Q8TCZ7 52 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms