RNA–Protein interactions for RNA: ENST00000475319.1

ECHDC1-215, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 1,543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-215ENST00000475319 C10orf99Q6UWK7 81 aa3.25□□□□□ -1.89
ECHDC1-215ENST00000475319 RPL37P61927 97 aaKnown RBP3.24□□□□□ -1.89
ECHDC1-215ENST00000475319 PLAC4Q8WY50 150 aa3.21□□□□□ -1.9
ECHDC1-215ENST00000475319 STAB2Q8WWQ8 2551 aa3.2□□□□□ -1.9
ECHDC1-215ENST00000475319 DNAH9Q9NYC9 4486 aa3.2□□□□□ -1.9
ECHDC1-215ENST00000475319 DNAH3Q8TD57 4116 aa3.19□□□□□ -1.9
ECHDC1-215ENST00000475319 PRLHP81277 87 aa3.19□□□□□ -1.9
ECHDC1-215ENST00000475319 KMT2CQ8NEZ4 4911 aaKnown RBP3.18□□□□□ -1.9
ECHDC1-215ENST00000475319 C10orf95Q9H7T3 257 aa3.17□□□□□ -1.9
ECHDC1-215ENST00000475319 COL7A1Q02388 2944 aa3.17□□□□□ -1.9
ECHDC1-215ENST00000475319 DYNC2H1Q8NCM8 4307 aaKnown RBP3.16□□□□□ -1.9
ECHDC1-215ENST00000475319 SPINK1P00995 79 aa3.16□□□□□ -1.9
ECHDC1-215ENST00000475319 TENM2Q9NT68 2774 aa3.16□□□□□ -1.9
ECHDC1-215ENST00000475319 RYR3Q15413 4870 aa3.16□□□□□ -1.9
ECHDC1-215ENST00000475319 KRTAP10-12P60413 245 aa3.15□□□□□ -1.9
ECHDC1-215ENST00000475319 BIRC6Q9NR09 4857 aa3.15□□□□□ -1.91
ECHDC1-215ENST00000475319 H3BNG1 76 aa3.14□□□□□ -1.91
ECHDC1-215ENST00000475319 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
ECHDC1-215ENST00000475319 RYR2Q92736 4967 aa3.13□□□□□ -1.91
ECHDC1-215ENST00000475319 LINC01556Q5JQF7 62 aa3.13□□□□□ -1.91
ECHDC1-215ENST00000475319 INE1O15225 51 aa3.12□□□□□ -1.91
ECHDC1-215ENST00000475319 DEFB135Q30KP9 77 aa3.12□□□□□ -1.91
ECHDC1-215ENST00000475319 SPACA4Q8TDM5 124 aa3.12□□□□□ -1.91
ECHDC1-215ENST00000475319 R4GN34 69 aa3.12□□□□□ -1.91
ECHDC1-215ENST00000475319 DNAH1Q9P2D7 4330 aa3.11□□□□□ -1.91
ECHDC1-215ENST00000475319 HUWE1Q7Z6Z7 4374 aaKnown RBP3.11□□□□□ -1.91
ECHDC1-215ENST00000475319 A0A096LNI7 61 aa3.1□□□□□ -1.91
ECHDC1-215ENST00000475319 SPART-AS1P0CW21 52 aa3.1□□□□□ -1.91
ECHDC1-215ENST00000475319 Q6ZRN7 208 aaPredicted RBP3.1□□□□□ -1.91
ECHDC1-215ENST00000475319 UBE2DNLQ8IWF7 75 aa3.1□□□□□ -1.91
ECHDC1-215ENST00000475319 DNAH7Q8WXX0 4024 aa3.1□□□□□ -1.91
ECHDC1-215ENST00000475319 SACSQ9NZJ4 4579 aa3.09□□□□□ -1.91
ECHDC1-215ENST00000475319 KRTAP13-1Q8IUC0 172 aa3.07□□□□□ -1.92
ECHDC1-215ENST00000475319 EPPK1P58107 5090 aaKnown RBP3.06□□□□□ -1.92
ECHDC1-215ENST00000475319 KRTAP5-8O75690 187 aa3.06□□□□□ -1.92
ECHDC1-215ENST00000475319 APLNQ9ULZ1 77 aa3.05□□□□□ -1.92
ECHDC1-215ENST00000475319 PLECQ15149 4684 aaKnown RBP3.05□□□□□ -1.92
ECHDC1-215ENST00000475319 KRTAP1-4P0C5Y4 121 aa3.04□□□□□ -1.92
ECHDC1-215ENST00000475319 HTN3P15516 51 aa3.04□□□□□ -1.92
ECHDC1-215ENST00000475319 SPINK6Q6UWN8 80 aa3.04□□□□□ -1.92
ECHDC1-215ENST00000475319 S4R3F8 94 aa3.04□□□□□ -1.92
ECHDC1-215ENST00000475319 DEFB4AO15263 64 aa3.03□□□□□ -1.92
ECHDC1-215ENST00000475319 FLG2Q5D862 2391 aaPredicted RBP3.03□□□□□ -1.93
ECHDC1-215ENST00000475319 STARD9Q9P2P6 4700 aa3.02□□□□□ -1.93
ECHDC1-215ENST00000475319 LYSTQ99698 3801 aa3.02□□□□□ -1.93
ECHDC1-215ENST00000475319 HYDINQ4G0P3 5121 aa3□□□□□ -1.93
ECHDC1-215ENST00000475319 DNAH10Q8IVF4 4471 aa2.99□□□□□ -1.93
ECHDC1-215ENST00000475319 HERC2O95714 4834 aa2.99□□□□□ -1.93
ECHDC1-215ENST00000475319 KRTAP12-2P59991 146 aa2.98□□□□□ -1.93
ECHDC1-215ENST00000475319 CSMD3Q7Z407 3707 aa2.98□□□□□ -1.93
ECHDC1-215ENST00000475319 DNAH6Q9C0G6 4158 aa2.97□□□□□ -1.93
ECHDC1-215ENST00000475319 A0A0D9SG42 100 aa2.97□□□□□ -1.93
ECHDC1-215ENST00000475319 A0A1B0GVY2 172 aa2.97□□□□□ -1.93
ECHDC1-215ENST00000475319 PP632Q6XCG6 107 aa2.96□□□□□ -1.94
ECHDC1-215ENST00000475319 VPS13DQ5THJ4 4388 aa2.95□□□□□ -1.94
ECHDC1-215ENST00000475319 PCLOQ9Y6V0 5065 aa2.94□□□□□ -1.94
ECHDC1-215ENST00000475319 RYR1P21817 5038 aa2.93□□□□□ -1.94
ECHDC1-215ENST00000475319 KIAA1109Q2LD37 5005 aa2.93□□□□□ -1.94
ECHDC1-215ENST00000475319 KRTAP13-4Q3LI77 160 aa2.93□□□□□ -1.94
ECHDC1-215ENST00000475319 DNAH11Q96DT5 4516 aa2.92□□□□□ -1.94
ECHDC1-215ENST00000475319 HECTD4Q9Y4D8 3996 aa2.92□□□□□ -1.94
ECHDC1-215ENST00000475319 DNAH17Q9UFH2 4485 aa2.91□□□□□ -1.94
ECHDC1-215ENST00000475319 LCE3CQ5T5A8 94 aa2.91□□□□□ -1.94
ECHDC1-215ENST00000475319 KMT2AQ03164 3969 aa2.91□□□□□ -1.94
ECHDC1-215ENST00000475319 KRTAP12-1P59990 96 aa2.9□□□□□ -1.95
ECHDC1-215ENST00000475319 LCE3AQ5TA76 89 aa2.9□□□□□ -1.95
ECHDC1-215ENST00000475319 DYNC1H1Q14204 4646 aaKnown RBP2.9□□□□□ -1.95
ECHDC1-215ENST00000475319 FRAS1Q86XX4 4008 aa2.89□□□□□ -1.95
ECHDC1-215ENST00000475319 SPRR5A0A1B0GTR4 108 aa2.88□□□□□ -1.95
ECHDC1-215ENST00000475319 Q5VSD8 79 aa2.88□□□□□ -1.95
ECHDC1-215ENST00000475319 DMBT1Q9UGM3 2413 aaPredicted RBP2.88□□□□□ -1.95
ECHDC1-215ENST00000475319 KRTAP10-8P60410 259 aa2.87□□□□□ -1.95
ECHDC1-215ENST00000475319 ABCA13Q86UQ4 5058 aa2.85□□□□□ -1.95
ECHDC1-215ENST00000475319 FAT2Q9NYQ8 4349 aa2.85□□□□□ -1.95
ECHDC1-215ENST00000475319 PKHD1P08F94 4074 aa2.85□□□□□ -1.95
ECHDC1-215ENST00000475319 M0QZ58 72 aa2.84□□□□□ -1.95
ECHDC1-215ENST00000475319 DNAH2Q9P225 4427 aa2.84□□□□□ -1.95
ECHDC1-215ENST00000475319 SMR3BP02814 79 aaPredicted RBP2.83□□□□□ -1.96
ECHDC1-215ENST00000475319 PKD1P98161 4303 aa2.83□□□□□ -1.96
ECHDC1-215ENST00000475319 KRTAP10-1P60331 282 aa2.83□□□□□ -1.96
ECHDC1-215ENST00000475319 HSPG2P98160 4391 aa2.82□□□□□ -1.96
ECHDC1-215ENST00000475319 LRP1BQ9NZR2 4599 aa2.8□□□□□ -1.96
ECHDC1-215ENST00000475319 DNAH5Q8TE73 4624 aa2.8□□□□□ -1.96
ECHDC1-215ENST00000475319 SRRM2Q9UQ35 2752 aaKnown RBP2.78□□□□□ -1.96
ECHDC1-215ENST00000475319 APOBP04114 4563 aaKnown RBP2.78□□□□□ -1.96
ECHDC1-215ENST00000475319 HERC1Q15751 4861 aa2.74□□□□□ -1.97
ECHDC1-215ENST00000475319 VPS13BQ7Z7G8 4022 aa2.74□□□□□ -1.97
ECHDC1-215ENST00000475319 RPS29P62273 56 aaKnown RBP2.73□□□□□ -1.97
ECHDC1-215ENST00000475319 FAT1Q14517 4588 aa2.71□□□□□ -1.98
ECHDC1-215ENST00000475319 KRTAP13-2Q52LG2 175 aa2.69□□□□□ -1.98
ECHDC1-215ENST00000475319 MYCBP2O75592 4640 aa2.68□□□□□ -1.98
ECHDC1-215ENST00000475319 DNAH8Q96JB1 4490 aa2.67□□□□□ -1.98
ECHDC1-215ENST00000475319 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
ECHDC1-215ENST00000475319 KRTAP10-4P60372 401 aaPredicted RBP2.64□□□□□ -1.99
ECHDC1-215ENST00000475319 HMCN2Q8NDA2 5059 aa2.64□□□□□ -1.99
ECHDC1-215ENST00000475319 LCE1CQ5T751 118 aa2.63□□□□□ -1.99
ECHDC1-215ENST00000475319 LCE1BQ5T7P3 118 aa2.63□□□□□ -1.99
ECHDC1-215ENST00000475319 KRTAP5-5Q701N2 237 aaPredicted RBP2.63□□□□□ -1.99
ECHDC1-215ENST00000475319 UBR4Q5T4S7 5183 aa2.62□□□□□ -1.99
ECHDC1-215ENST00000475319 MT1HL1P0DM35 61 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms