RNA–Protein interactions for RNA: ENST00000474157.1

GPNMB-209, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 513 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-209ENST00000474157 KRTAP13-3Q3SY46 172 aa4.16□□□□□ -1.74
GPNMB-209ENST00000474157 COX6B2Q6YFQ2 88 aa4.16□□□□□ -1.74
GPNMB-209ENST00000474157 SSBP3-AS1Q7Z2R9 100 aa4.16□□□□□ -1.74
GPNMB-209ENST00000474157 DMBT1Q9UGM3 2413 aaPredicted RBP4.16□□□□□ -1.74
GPNMB-209ENST00000474157 PKHD1P08F94 4074 aa4.16□□□□□ -1.74
GPNMB-209ENST00000474157 NBDYA0A0U1RRE5 68 aa4.13□□□□□ -1.75
GPNMB-209ENST00000474157 HSPG2P98160 4391 aa4.12□□□□□ -1.75
GPNMB-209ENST00000474157 DYNC1H1Q14204 4646 aaKnown RBP4.12□□□□□ -1.75
GPNMB-209ENST00000474157 DNAH11Q96DT5 4516 aa4.12□□□□□ -1.75
GPNMB-209ENST00000474157 VPS13DQ5THJ4 4388 aa4.1□□□□□ -1.75
GPNMB-209ENST00000474157 A0A0G2JQZ4 141 aa4.1□□□□□ -1.75
GPNMB-209ENST00000474157 A0A1B0GU33 70 aa4.1□□□□□ -1.75
GPNMB-209ENST00000474157 GIG44P09565 113 aaPredicted RBP4.1□□□□□ -1.75
GPNMB-209ENST00000474157 Q6ZSA8 131 aa4.09□□□□□ -1.75
GPNMB-209ENST00000474157 A0A1W2PNN7 141 aa4.08□□□□□ -1.76
GPNMB-209ENST00000474157 H0YAA0 97 aa4.08□□□□□ -1.76
GPNMB-209ENST00000474157 DEFB130BP0DP73 79 aa4.08□□□□□ -1.76
GPNMB-209ENST00000474157 DEFB130AP0DP74 79 aa4.08□□□□□ -1.76
GPNMB-209ENST00000474157 PSORS1C2Q9UIG4 136 aa4.08□□□□□ -1.76
GPNMB-209ENST00000474157 FAT2Q9NYQ8 4349 aa4.07□□□□□ -1.76
GPNMB-209ENST00000474157 H3BNG1 76 aa4.07□□□□□ -1.76
GPNMB-209ENST00000474157 CRIPTQ9P021 101 aa4.07□□□□□ -1.76
GPNMB-209ENST00000474157 DNAH2Q9P225 4427 aa4.07□□□□□ -1.76
GPNMB-209ENST00000474157 DEFB135Q30KP9 77 aa4.06□□□□□ -1.76
GPNMB-209ENST00000474157 SRRM2Q9UQ35 2752 aaKnown RBP4.05□□□□□ -1.76
GPNMB-209ENST00000474157 H1FX-AS1Q4G0G2 97 aa4.05□□□□□ -1.76
GPNMB-209ENST00000474157 DEFB4AO15263 64 aa4.04□□□□□ -1.76
GPNMB-209ENST00000474157 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
GPNMB-209ENST00000474157 APLNQ9ULZ1 77 aa4.01□□□□□ -1.77
GPNMB-209ENST00000474157 PKD1P98161 4303 aa3.99□□□□□ -1.77
GPNMB-209ENST00000474157 DNAH6Q9C0G6 4158 aa3.99□□□□□ -1.77
GPNMB-209ENST00000474157 DNAH17Q9UFH2 4485 aa3.99□□□□□ -1.77
GPNMB-209ENST00000474157 A0A096LPF7 62 aa3.99□□□□□ -1.77
GPNMB-209ENST00000474157 RPL37P61927 97 aaKnown RBP3.99□□□□□ -1.77
GPNMB-209ENST00000474157 TPRXLQ17RH7 258 aa3.99□□□□□ -1.77
GPNMB-209ENST00000474157 APOBP04114 4563 aaKnown RBP3.98□□□□□ -1.77
GPNMB-209ENST00000474157 LRP1BQ9NZR2 4599 aa3.98□□□□□ -1.77
GPNMB-209ENST00000474157 TYMSOSQ8TAI1 123 aa3.97□□□□□ -1.77
GPNMB-209ENST00000474157 MYCBP2O75592 4640 aa3.97□□□□□ -1.77
GPNMB-209ENST00000474157 SPART-AS1P0CW21 52 aa3.96□□□□□ -1.78
GPNMB-209ENST00000474157 LINC01556Q5JQF7 62 aa3.96□□□□□ -1.78
GPNMB-209ENST00000474157 HMCN2Q8NDA2 5059 aa3.96□□□□□ -1.78
GPNMB-209ENST00000474157 FLG2Q5D862 2391 aaPredicted RBP3.95□□□□□ -1.78
GPNMB-209ENST00000474157 Q5VSD8 79 aa3.95□□□□□ -1.78
GPNMB-209ENST00000474157 HTN3P15516 51 aa3.94□□□□□ -1.78
GPNMB-209ENST00000474157 KRTAP10-6P60371 365 aaPredicted RBP3.93□□□□□ -1.78
GPNMB-209ENST00000474157 PLAC4Q8WY50 150 aa3.93□□□□□ -1.78
GPNMB-209ENST00000474157 PRO2289Q9P1D8 64 aa3.93□□□□□ -1.78
GPNMB-209ENST00000474157 DNAH5Q8TE73 4624 aa3.93□□□□□ -1.78
GPNMB-209ENST00000474157 PRLHP81277 87 aa3.92□□□□□ -1.78
GPNMB-209ENST00000474157 UBE2DNLQ8IWF7 75 aa3.91□□□□□ -1.78
GPNMB-209ENST00000474157 KRTAP10-12P60413 245 aa3.89□□□□□ -1.79
GPNMB-209ENST00000474157 FAT1Q14517 4588 aa3.89□□□□□ -1.79
GPNMB-209ENST00000474157 RNF213Q63HN8 5207 aa3.88□□□□□ -1.79
GPNMB-209ENST00000474157 SMR3BP02814 79 aaPredicted RBP3.86□□□□□ -1.79
GPNMB-209ENST00000474157 KRTAP13-1Q8IUC0 172 aa3.85□□□□□ -1.79
GPNMB-209ENST00000474157 SPINK1P00995 79 aa3.82□□□□□ -1.8
GPNMB-209ENST00000474157 VPS13BQ7Z7G8 4022 aa3.82□□□□□ -1.8
GPNMB-209ENST00000474157 A0A096LNI7 61 aa3.8□□□□□ -1.8
GPNMB-209ENST00000474157 INE1O15225 51 aa3.8□□□□□ -1.8
GPNMB-209ENST00000474157 KRTAP10-1P60331 282 aa3.78□□□□□ -1.8
GPNMB-209ENST00000474157 LCE3CQ5T5A8 94 aa3.78□□□□□ -1.8
GPNMB-209ENST00000474157 Q6ZRN7 208 aaPredicted RBP3.77□□□□□ -1.81
GPNMB-209ENST00000474157 LRP2P98164 4655 aa3.77□□□□□ -1.81
GPNMB-209ENST00000474157 KRTAP10-7P60409 375 aaPredicted RBP3.76□□□□□ -1.81
GPNMB-209ENST00000474157 C10orf95Q9H7T3 257 aa3.75□□□□□ -1.81
GPNMB-209ENST00000474157 SPINK6Q6UWN8 80 aa3.74□□□□□ -1.81
GPNMB-209ENST00000474157 DNAH8Q96JB1 4490 aa3.74□□□□□ -1.81
GPNMB-209ENST00000474157 KRTAP10-5P60370 271 aa3.72□□□□□ -1.81
GPNMB-209ENST00000474157 LRP1Q07954 4544 aaKnown RBP3.72□□□□□ -1.81
GPNMB-209ENST00000474157 LCE1EQ5T753 118 aa3.71□□□□□ -1.82
GPNMB-209ENST00000474157 R4GN34 69 aa3.71□□□□□ -1.82
GPNMB-209ENST00000474157 S4R3F8 94 aa3.71□□□□□ -1.82
GPNMB-209ENST00000474157 PKHD1L1Q86WI1 4243 aa3.7□□□□□ -1.82
GPNMB-209ENST00000474157 PP632Q6XCG6 107 aa3.69□□□□□ -1.82
GPNMB-209ENST00000474157 FAT4Q6V0I7 4981 aa3.68□□□□□ -1.82
GPNMB-209ENST00000474157 KRTAP1-4P0C5Y4 121 aa3.67□□□□□ -1.82
GPNMB-209ENST00000474157 MUC2Q02817 5179 aa3.67□□□□□ -1.82
GPNMB-209ENST00000474157 SPACA4Q8TDM5 124 aa3.66□□□□□ -1.82
GPNMB-209ENST00000474157 MT1HL1P0DM35 61 aa3.65□□□□□ -1.83
GPNMB-209ENST00000474157 FAT3Q8TDW7 4589 aa3.65□□□□□ -1.83
GPNMB-209ENST00000474157 KRTAP10-4P60372 401 aaPredicted RBP3.64□□□□□ -1.83
GPNMB-209ENST00000474157 CRCT1Q9UGL9 99 aa3.64□□□□□ -1.83
GPNMB-209ENST00000474157 KRTAP12-2P59991 146 aa3.63□□□□□ -1.83
GPNMB-209ENST00000474157 FSIP2Q5CZC0 6907 aa3.61□□□□□ -1.83
GPNMB-209ENST00000474157 TNXBP22105 4242 aa3.6□□□□□ -1.83
GPNMB-209ENST00000474157 M0QZ58 72 aa3.59□□□□□ -1.83
GPNMB-209ENST00000474157 A0A0D9SG42 100 aa3.57□□□□□ -1.84
GPNMB-209ENST00000474157 KRTAP12-1P59990 96 aa3.56□□□□□ -1.84
GPNMB-209ENST00000474157 RPS29P62273 56 aaKnown RBP3.54□□□□□ -1.84
GPNMB-209ENST00000474157 KRTAP5-11Q6L8G4 156 aa3.54□□□□□ -1.84
GPNMB-209ENST00000474157 SPRR5A0A1B0GTR4 108 aa3.53□□□□□ -1.84
GPNMB-209ENST00000474157 KRTAP13-4Q3LI77 160 aa3.53□□□□□ -1.84
GPNMB-209ENST00000474157 LPAP08519 4548 aa3.48□□□□□ -1.85
GPNMB-209ENST00000474157 KRTAP10-8P60410 259 aa3.46□□□□□ -1.86
GPNMB-209ENST00000474157 LCE3EQ5T5B0 92 aa3.45□□□□□ -1.86
GPNMB-209ENST00000474157 KRTAP9-6A8MVA2 160 aa3.39□□□□□ -1.87
GPNMB-209ENST00000474157 KRTAP13-2Q52LG2 175 aa3.36□□□□□ -1.87
GPNMB-209ENST00000474157 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
GPNMB-209ENST00000474157 MUC17Q685J3 4493 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms